BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21320.1

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932059 jgi|Araly1|932059|scaffold_400047.1                        846    0.0  


> Ahg932059 jgi|Araly1|932059|scaffold_400047.1
Length=551

 Score =  846 bits (458),  Expect = 0.0
 Identities = 497/516 (96%), Gaps = 1/516 (0%)
 Strand=Plus/Plus

Query  220  TAATCGTTTGAGTAAAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA  279
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    TAATCGTTTGAGT-AAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA  60

Query  280  TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA  339
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCACA  120

Query  340  AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCAC  399
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  121  AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCGC  180

Query  400  CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT  240

Query  460  CCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGT  519
            |||||||||| |||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct  241  CCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACACAAGCGGT  300

Query  520  TTCTATTACTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAAC  579
            |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  301  TTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCCGACCAAC  360

Query  580  TGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG  639
            ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct  361  TGGGATTACGGTGTCAAAAGGTTTCCTCTGGTCGCGGTCAAGAATCAAATGGAAATGGTG  420

Query  640  ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGAT  699
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  421  ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAGAGAGTTCACGAGCCTGGAT  480

Query  700  CACATAACCAAGAGGAGGGTATTGATGTAAATAACG  735
            || || ||||||||||||||||||||||||||||||
Sbjct  481  CAAATCACCAAGAGGAGGGTATTGATGTAAATAACG  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35225575308


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5