BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21320.1 Length=949 Score E Sequences producing significant alignments: (Bits) Value Ahg932059 jgi|Araly1|932059|scaffold_400047.1 846 0.0 > Ahg932059 jgi|Araly1|932059|scaffold_400047.1 Length=551 Score = 846 bits (458), Expect = 0.0 Identities = 497/516 (96%), Gaps = 1/516 (0%) Strand=Plus/Plus Query 220 TAATCGTTTGAGTAAAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TAATCGTTTGAGT-AAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 60 Query 280 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCACA 120 Query 340 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCAC 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCGC 180 Query 400 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 240 Query 460 CCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGT 519 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| | ||||| Sbjct 241 CCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACACAAGCGGT 300 Query 520 TTCTATTACTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAAC 579 |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 TTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCCGACCAAC 360 Query 580 TGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG 639 ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct 361 TGGGATTACGGTGTCAAAAGGTTTCCTCTGGTCGCGGTCAAGAATCAAATGGAAATGGTG 420 Query 640 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGAT 699 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 421 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAGAGAGTTCACGAGCCTGGAT 480 Query 700 CACATAACCAAGAGGAGGGTATTGATGTAAATAACG 735 || || |||||||||||||||||||||||||||||| Sbjct 481 CAAATCACCAAGAGGAGGGTATTGATGTAAATAACG 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35225575308 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5