BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21330.1 Length=1553 Score E Sequences producing significant alignments: (Bits) Value Ahg932060 jgi|Araly1|932060|scaffold_400048.1 2152 0.0 Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1 1051 0.0 > Ahg932060 jgi|Araly1|932060|scaffold_400048.1 Length=1293 Score = 2152 bits (1165), Expect = 0.0 Identities = 1243/1281 (97%), Gaps = 3/1281 (0%) Strand=Plus/Plus Query 81 TAGCAACAATGGCGTCAAGCACTGCGACTATGCTCAAAGCCTCACCGGTGAAATCTGATT 140 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 13 TAGCAACAATGGCGTCAAGCACTGCCACTATGCTCAAAGCCTCACCGGTGAAATCTGATT 72 Query 141 GGGTTAAGGGACAGAGTCTTCTCCT-C--CGTCAACCTTCCTCTGTCTCAGCTATTCGCA 197 ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct 73 GGGTTAAGGGACAGAGTCTCCTCCTCCGTCGTCAACCTTCCTCTGTCTCAGCTATTCGCA 132 Query 198 GCCACGTGGCACCTTCCGCTCTCACCGTCCGAGCCGCTTCTGCTTACGCCGATGAGCTCG 257 ||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||| Sbjct 133 GCCACGTGGCACCTTCCTCTCTCACCGTCCGTGCCGCTTCTGCTTACGCCGACGAACTCG 192 Query 258 TCAAAACCGCTAAAACAATCGCGTCTCCGGGACACGGAATTATGGCGATGGATGAGTCCA 317 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 193 TCAAAACAGCTAAAAAAATCGCGTCTCCGGGACACGGAATTATGGCGATGGATGAGTCAA 252 Query 318 ACGCGACTTGTGGAAAGCGTTTGGCGTCAATTGGGCTAGAGAACACGGAGGCTAACCGTC 377 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 253 ACGCGACTTGTGGAAAGCGTTTGGCGTCCATTGGGCTAGAGAACACGGAGGCTAACCGTC 312 Query 378 AAGCTTACAGGACGTTGCTTGTGTCGGCTCCAGGACTTGGACAGTACATCTCCGGAGCTA 437 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 313 AAGCTTACCGGACGTTGCTTGTGTCGGCTCCAGGACTGGGACAGTACATCTCCGGAGCTA 372 Query 438 TCCTGTTCGAGGAGACTCTGTACCAATCCACCACTGATGGCAAGAAAATGGTTGATGTTC 497 ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| Sbjct 373 TCCTGTTCGAGGAGACTTTGTACCAATCCACCACCGACGGCAAGAAAATGGTTGATGTTC 432 Query 498 TCGTCGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTG 557 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 TCGTTGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTG 492 Query 558 GGTCTTACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTCTCGCACCGCTGCTT 617 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 493 GGTCTAACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTCTCGTACCGCTGCTT 552 Query 618 ACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCAAATGGAC 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 ACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCAAATGGAC 612 Query 678 CCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTACGCAGCTATTTCTC 737 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 613 CCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTACGCTGCTATTTCTC 672 Query 738 AAGACAGCGGTCTGGTGCCGATTGTGGAGCCAGAGATTATGTTGGACGGAGAACACGGCA 797 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 673 AGGACAGCGGTCTGGTGCCGATTGTGGAGCCAGAGATTCTGTTGGACGGAGAACACGGCA 732 Query 798 TTGACAGGACATACGACGTTGCAGAGAAGGTTTGGGCTGAGGTCTTCTTCTACCTCGCTC 857 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 TTGACAGGACATACGAGGTTGCAGAGAAGGTTTGGGCTGAGGTCTTCTTCTACCTCGCTC 792 Query 858 AGAACAACGTCATGTTCGAAGGTATTCTCCTGAAGCCAAGCATGGTTACTCCAGGAGCTG 917 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 793 AGAACAACGTCCTGTTCGAAGGTATTCTCCTGAAGCCGAGCATGGTTACTCCAGGAGCTG 852 Query 918 AGGCCACAGACAGAGCTACTCCTGAGCAGGTTGCTTCCTACACTCTCAAGCTCCTTCGCA 977 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 853 AGGCTACAGACAGAGCTACTCCCGAGCAGGTTGCTTCCTACACTCTCAAGCTCCTTCGCA 912 Query 978 ACAGAATCCCTCCTGCTGTCCCCGGAATCATGTTCTTGTCTGGTGGACAGTCCGAGTTGG 1037 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 913 ACAGAATCCCTCCCGCTGTCCCCGGAATCATGTTCTTGTCTGGTGGGCAGTCCGAGTTGG 972 Query 1038 AGGCGACCTTGAACTTGAACGCAATGAACCAGGCACCGAACCCATGGCACGTGTCCTTCT 1097 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 AGGCGACCTTGAACTTAAACGCAATGAACCAGGCACCGAACCCATGGCACGTGTCCTTCT 1032 Query 1098 CCTACGCACGTGCCTTGCAGAACACTTGCTTGAAGACATGGGGAGGCAAGGAAGAGAACG 1157 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1033 CCTATGCACGTGCCTTGCAGAACACTTGCTTGAAGACATGGGGAGGCAGGGAAGAGAACG 1092 Query 1158 TGAAGGCGGCTCAGGACATTCTCTTGGCCAGAGCCAAAGCCAATTCGCTGGCTCAGCTCG 1217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1093 TGAAGGCGGCTCAGGACATTCTCTTGGCCAGAGCCAAAGCCAATTCGCTGGCTCAGCTCG 1152 Query 1218 GGAAATACACTGGAGAAGGCGAGTCTGAGGAAGCCAAGGAGGGTATGTTTGTAAAAGGCT 1277 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1153 GGAAATACACAGGAGAAGGCGAGTCCGAGGAAGCCAAGGAGGGTATGTTTGTAAAAGGCT 1212 Query 1278 ACACCTACTAAGCTATTTGTAATAATGGTTCCATAGATCAAAACTCAAAAACTTGAGCTT 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 ACACCTACTAAGCTATTTGTAATAATGGTTCCATAGATCAAAACTCAAAAACTTGAGCTT 1272 Query 1338 GATTCTGGTCATTTGAGTTAT 1358 ||||||||| |||||||||| Sbjct 1273 GATTCTGGTGTTTTGAGTTAT 1293 > Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1 Length=1500 Score = 1051 bits (569), Expect = 0.0 Identities = 975/1167 (84%), Gaps = 44/1167 (4%) Strand=Plus/Plus Query 131 AAATCTGATTGGGTTAAGGGACAGAGTC-TTCTCCTCCGTCAACCTTCCTCTGTCTCAGC 189 ||||| || ||||| |||||||| || | ||||| ||||||| ||||| || | ||| | Sbjct 146 AAATCCGAATGGGTCAAGGGACAAAG-CGTTCTCTTCCGTCAGCCTTCTTCCGCCTCCG- 203 Query 190 T-ATTCGCAGCCA-CGTGGCACCTTCCGCTCTCACCGTCCGAGCCGCTT-CTGCTTACGC 246 | | | | || | |||| |||| | | | ||||||||||| ||||||| || | ||||| Sbjct 204 TCGTCCTCCGCAACCGTGCCACC-T-C-C-CTCACCGTCCGTGCCGCTTCCT-CCTACGC 258 Query 247 CGATGAGCTCGTCAAAACCGCTAAAACAATCGCGTCTCCGGGACACGGAAT-TATGGCGA 305 ||||||||| || || || || ||||| || ||||||||||||| ||||| | |||||| Sbjct 259 CGATGAGCTTGTTAAGACAGCGAAAACTATTGCGTCTCCGGGACGTGGAATCT-TGGCGA 317 Query 306 TGGATGAGTCCAACGCGACTTG-TGGAAAGCGTTTGGCGTCAATTGGGCTAGAGAACACG 364 |||| ||||| ||||||||||| ||||| ||||||| || || |||||||||||||| Sbjct 318 TGGACGAGTCGAACGCGACTTGCGGGAAA-CGTTTGGATTCGATAGGGCTAGAGAACACT 376 Query 365 GAGGCTAACCGTCAAGCTTACAGGACGTTGCTT-GTGTCGGCTCCAGGACTTGGACAGTA 423 ||||| ||||||||||||| | |||| ||| || || || || || ||||| || ||||| Sbjct 377 GAGGCAAACCGTCAAGCTTTCCGGACTTTG-TTGGTCTCTGCACCTGGACTGGGGCAGTA 435 Query 424 CATCTCCGGAGCTATCCTGTTCGAGGAGACTCTGTACCAATCCACCACTGATGGCAAGAA 483 ||||||||| || ||||| || ||||||||| |||| || || ||||| || || ||||| Sbjct 436 CATCTCCGGCGCAATCCTATTTGAGGAGACTTTGTATCAGTCTACCACCGAAGGGAAGAA 495 Query 484 AATGGTTGATGTTCTCGTCGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTT 543 |||||| || || ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 496 AATGGTCGACGTCCTCGTCGAGCAGAACATTGTCCCTGGTATCAAAGTTGACAAGGGTTT 555 Query 544 GGTGCCACTTGTTGGGTCTTACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTC 603 ||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||| Sbjct 556 GGTGCCACTTGTTGGATCCAACAATGAGTCATGGTGCCAAGGACTTGACGGTCTAGCCTC 615 Query 604 TCGCACCGCTGCTTACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAG 663 | | || ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 616 TAGAACTGCTGCTTACTACCAACAGGGTGCGCGTTTTGCCAAATGGCGTACTGTCGTGAG 675 Query 664 CATTCCAAATGGACCCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTA 723 |||||| || || || |||||| | || || |||||||| |||||||| |||||||| || Sbjct 676 CATTCCTAACGGTCCTTCTGCTCTCGCCGTCAAAGAAGCTGCTTGGGGTCTTGCTCGATA 735 Query 724 CGCAGCTATTTCTCAAGACAGC-GGTCTGGTGCCGATTGTGGAGCCAGAGAT-TATGTTG 781 ||| || ||||| || |||||| ||| |||| |||||||||||||||||||| | ||||| Sbjct 736 CGCTGCCATTTCACAGGACAGCGGGT-TGGTTCCGATTGTGGAGCCAGAGATCT-TGTTG 793 Query 782 GACGGAGAACACGGCATTGACAGGACATACGACGTTGCAGAGAAGGTTTGGGCTGAGGTC 841 || |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 794 GATGGAGAACACGACATTGACAGAACATACGACGTAGCAGAGAAGGTTTGGGCTGAGGTT 853 Query 842 TTCTTCTACCTCGCTCAGAACAACGTCATGTTCGAAGGTATTCTCCTGAAGCCAAGCATG 901 ||||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||| Sbjct 854 TTCTTTTACCTTGCTCAGAACAATGTCATGTTTGAAGGTATTCTCCTAAAACCAAGTATG 913 Query 902 GTTACTCCAGGAGCTGAGGCCACAGACAGAGCTACTCCTGAGCAGGTTGCTTCCTACACT 961 || ||||| ||||||||| | | |||||||| ||||||||| | ||||| ||||||| Sbjct 914 GTGACTCCCGGAGCTGAGTCTAAAGACAGAGTTACTCCTGAAAAAGTTGCCGCCTACACC 973 Query 962 CTCAAGCTCCTTCGCAACAGAATCCCTCCTGCTGTCCCCGGAATCATGTTCTTGTCTGGT 1021 ||||||||||| |||||||| | ||| | | ||| | || |||||||| || Sbjct 974 CTCAAGCTCCTCCGCAACAG-A---GTCC--C--T-CCC-G---CA--TTCTTGTCCGGA 1018 Query 1022 GGACAGTCCGAGTTGGAGGCGAC-CTTGAACTTGAACGCAATGAACCAGGCACCGAACCC 1080 |||||||| ||| ||||||| || | | ||| |||||||||||||||||||||| ||||| Sbjct 1019 GGACAGTCAGAGGTGGAGGCAACAC-TCAACCTGAACGCAATGAACCAGGCACCAAACCC 1077 Query 1081 ATGGCACGTGTCCTTCTCCTACGCACGTGCCTTGCAGAACACTTG-CTTGAAGACATGGG 1139 |||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||| Sbjct 1078 ATGGCACGTGTCCTTCTCCTACGCACGTGCGTTGCAGAACACTTGTCT-GAAAACATGGG 1136 Query 1140 GAGGCA-AGGAAGAGAACGTGAAGGCGGCTCAGGAC-ATTCTCTTGGCCAGAGCCAAAGC 1197 | |||| | ||||||||||| || |||||| || | |||||||||| | ||||| || Sbjct 1137 GCGGCAGACCC-GAGAACGTGAACGCAGCTCAG-ACCACTCTCTTGGCCCGTGCCAAGGC 1194 Query 1198 CAATTCGCTGGCTCAGCTCGGGAAATACACTGGAGAAGGCGAGTCTGAGGAAGCCAAGGA 1257 ||||||| ||||||||||||| |||||||||||||| || ||||| || || || ||||| Sbjct 1195 CAATTCGTTGGCTCAGCTCGGAAAATACACTGGAGAGGGTGAGTCCGAAGAGGCTAAGGA 1254 Query 1258 GGGTATGTTTGTAAAAGGCTACACCTA 1284 ||| ||||| || |||||||||||||| Sbjct 1255 GGGCATGTTCGTCAAAGGCTACACCTA 1281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58163804115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5