BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21380.1 Length=3614 Score E Sequences producing significant alignments: (Bits) Value Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1 5668 0.0 Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084 2359 0.0 Ahg952455 jgi|Araly1|952455|scaffold_7400001.1 424 3e-117 Ahg949340 jgi|Araly1|949340|scaffold_801227.1 248 2e-64 > Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1 Length=3578 Score = 5668 bits (3069), Expect = 0.0 Identities = 3421/3587 (95%), Gaps = 39/3587 (1%) Strand=Plus/Plus Query 29 agaaaga-cgaagaagatgaagagC--A-TATTGCTTTTTCTGTCCCCAGCCATATTTTT 84 ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 7 AGAAAGAGAGAAGAAGATGAAGAGCATATTATTGCTTTTTCTGTCCCCAGCCATATTTTC 66 Query 85 ACCGAGTCCGTAACCGAGTTTGAACGAGTTAGTGGATGGCTTCATCGTCGTCTAGAACTA 144 ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 67 ACCGATTTCGTAACCGAGTTTGAACGAGTTAGTGGATGGCTTCATCGTCATCTAGAACTA 126 Query 145 GGAGTCGTTCTCC-TTTCTCGCACCGTAGACCTCCGAGTCCTTACTCTTCGGCTTCGTCT 203 ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGAGTCGTTCTCCATTT-TCTCACCGTAGACCTCCGAGTCCTTACTCTTCGGCTTCGTCT 185 Query 204 ACTTCTTCGTCTCTTATAAATAATCGTCTATTACCTCGTTCTTCTTCCACACCTACTTCT 263 |||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 186 ACTTCTTCGTCTTTTATAAACAATCGTTTATTACCTCGCTCTTCTTCCACACCTACTTCT 245 Query 264 ACCGTTTACAATTCCGGCGGTGTAACCGGGTCCCGATCTATGTCGATTACTCGCACCATT 323 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 246 ACCGTTTACAATTCCGGCAGTGTAAGCGGGTCCCGATCTATGTCGATTACTCGCACCATT 305 Query 324 TCCGATTCCGGTCCCATCGGCGGCTCCGGGACTTATGGAGCCCAA---T-CG-----TAC 374 |||||||||||||| |||||||||||||||||||||||||| ||| | || ||| Sbjct 306 TCCGATTCCGGTCCAATCGGCGGCTCCGGGACTTATGGAGCGCAATCGTCCGTCACTTAC 365 Query 375 CCATCGGAGGGGCTCATTGGCGAGTCTGGGCAGACGATTACCTCTGAGCGAGATAGCATC 434 |||||||||||||| ||||||||||||| || ||| || ||||||||||||||||||||| Sbjct 366 CCATCGGAGGGGCTGATTGGCGAGTCTGTGCCGACTATCACCTCTGAGCGAGATAGCATC 425 Query 435 TCCGTCACCGTTCGATTTCGTCCGATGAGTGAGAGGGAGTATCAACGAGGAGATGAGATT 494 ||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||| Sbjct 426 TCCGTCACCGTTCGATTTCGTCCGATGAGTGAGAGAGAGTATCAAAGGGGAGACGAGATT 485 Query 495 GTTTGGTATCCTGACGCAGATAAGATGGTCAGGAATGAATACAATCCCCTCACAGCTTAC 554 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GTTTGGTATCCTGACGCGGATAAGATGGTCAGGAATGAATACAATCCCCTCACAGCTTAC 545 Query 555 GCATTTGATAAAGTTTTTGGACCACAGTCAACAACTCCAGAAGTATATGACGTAGCTGCT 614 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 546 GCATTTGATAAAGTTTTTGGACCACAATCAACAACTCCAGAAGTATATGACGTAGCTGCT 605 Query 615 AAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACGGAACCGTTTTTGCTTATGGTGTT 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 AAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACGGAACCGTTTTTGCTTATGGTGTT 665 Query 675 ACAAGCAGTGGAAAGACACATACAATGCATGGTGATCA-AGATTTTCCTGGAATCATACC 733 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 666 ACAAGCAGTGGAAAGACACATACAATGCATGGTGATCACA-ATTTTCCTGGAATCATACC 724 Query 734 ATTAGCAATAAAAGACGTGTTCAGTATCATTCAGGAAACCACCGGAAGAGAGTTTCTGCT 793 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 725 ATTAGCAATAAAAGACGTGTTCAGTATCATCCAGGAAACCACTGGAAGAGAGTTCCTGCT 784 Query 794 CCGTGTTTCATATCTTGAAATATACAATGAGGTGATAAATGACTTACTGGATCCAACAGG 853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 CCGTGTTTCATATCTTGAAATATACAATGAGGTGATAAATGACTTACTGGATCCAACAGG 844 Query 854 GCAAAATTTACGTATTAGAGAGGATTCCCAGGGCACTTACGTTGAGGGTATCAAGGAAGA 913 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GCAAAATTTACGAATTAGAGAGGATTCCCAGGGCACTTACGTTGAGGGTATCAAGGAAGA 904 Query 914 AGTCGTTTTGTCTCCAGGCCATGCGTTATCTTTCATTGCAGCTGGGGAAGAACATCGTCA 973 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 905 AGTCGTATTGTCTCCAGGCCATGCGCTATCTTTCATTGCAGCTGGGGAAGAACATCGTCA 964 Query 974 TGTTGGTTCAAATAATTTCAACCTGATGAGCAGCAGAAGTCACACAATATTTACACTGAT 1033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 TGTTGGTTCAAATAATTTCAACCTGATGAGCAGCAGAAGTCACACAATATTTACACTGAT 1024 Query 1034 GATTGAAAGTAGTGCTCATGGAGACCAATATGATGGAGTTATTTTTTCTCAGCTAAATTT 1093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 GATTGAAAGTAGTGCTCATGGAGACCAATATGATGGAGTTATTTTTTCTCAGCTAAATTT 1084 Query 1094 GATTGACTTAGCTGGATCTGAGAGTTCCAAAACTGAGACAACGGGACTGAGGAGGAAAGA 1153 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 GATTGACTTAGCTGGATCCGAGAGTTCCAAAACTGAGACAACGGGACTGAGGAGGAAAGA 1144 Query 1154 GGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTGATTGGAAAACTGACTGA 1213 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1145 GGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTAATTGGAAAACTGACTGA 1204 Query 1214 GGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTC 1273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 GGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTC 1264 Query 1274 ACTGAGTGGGCATGGGCATGTATCGCTCATATGTACAGTTACTCCTGCGTCAAGCAGTAC 1333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1265 ACTGAGTGGGCATGGGCATGTATCGCTCATATGTACAGTTACTCCTGCGTCAAGCAGTAC 1324 Query 1334 CGAGGAAACTCATAATACTTTGAAGTTTGCCAGCAGGGCAAAGAGAATTGAAATTAATGC 1393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 AGAGGAAACTCATAATACTTTGAAGTTTGCCAGCAGGGCAAAGAGAATTGAAATTAATGC 1384 Query 1394 CTCACGCAATAAGATCATAGATGAGAAGTCATTGATTAAGAAATATCAGAAAGAAATCTC 1453 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 CTCGCGCAATAAGATCATAGATGAGAAGTCATTGATTAAGAAATATCAGAAAGAAATCTC 1444 Query 1454 GACCCTCAAAGTCGAACTTGATCAGCTAAGAAGGGGTGTGCTAGTTGGTGTCAGTCACGA 1513 |||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1445 GACCCTCAGAGACGAACTTGATCAGCTAAGAAGGGGTGTGCTTGTTGGTGTCAGTCACGA 1504 Query 1514 AGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATT 1573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505 AGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATT 1564 Query 1574 GGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCT 1633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 GGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCT 1624 Query 1634 CATACTTGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGACACACCAGCTCATTC 1693 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1625 CATACTCGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGATACACCAGCTCAT-C 1683 Query 1694 T-CGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATAGTGATA 1752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1684 AGCGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATAGTGATA 1743 Query 1753 ATCTGGCATCTCCATCTTCGACTCTCTCTCTAGCATCAGATGCGCGACGGTCTTCCAGCA 1812 ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| Sbjct 1744 ATCTGGCATCTCCATCTTCAACTCTGTCTCTAGCATCAGATGCGAGACGGTCTTCCAGCA 1803 Query 1813 AGTTTAAGGATGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGA 1872 |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| Sbjct 1804 AGTTTAAGGATGAAAACTCTCCGGTTGGTTCTGGGGCAGAATTAACTCAAGGCGTTATGA 1863 Query 1873 CTCCCGATGAAATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTT 1932 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1864 ATCCAGATGAAATGGATCTCCTCGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTT 1923 Query 1933 TCGGCACAAGCACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGA 1992 || |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1924 TCAGCACAAGCACTCTTAAGCGTTTGGTGGATCAGTCCATAAATGATCCTGAAAACTCGA 1983 Query 1993 AAACCCAAATCCAGAATCTAGAAA-ATGATATTCAAGAAAAGCAAAGACAAATGAAATCC 2051 ||| ||||||||||||||||||| | || ||||||||||||||||||||||||| |||| Sbjct 1984 AAATCCAAATCCAGAATCTAGAACGA-GAGATTCAAGAAAAGCAAAGACAAATGAGATCC 2042 Query 2052 TTGGAACAGAGAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAG 2111 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2043 TTGGAACAGCGAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAG 2102 Query 2112 ATGCAAGAGAAAGTTATGAGATTGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAG 2171 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2103 ATGCAACAGAAAGTTATGAGATTGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAG 2162 Query 2172 ATTATATCAGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAAC 2231 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2163 ATCATATCAGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAAC 2222 Query 2232 AATGAATTGCACGAAAAGGTGCATCTTCTAGAGCAACGATTATCGAGTCAGAAGG-CCAC 2290 ||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||| Sbjct 2223 AATGAATTGCACGAAAAGGTGCATCTTCTAGAGGAACGATTATCGAATCAGA-GGTCCAC 2281 Query 2291 ACTGTCTTGTTGTGATGTTGTGACTGAAGAGTATGTAGATGAGCTGAAAAAGAAAGTACA 2350 ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 2282 ACTGTCTTGTTCTGATGCTGTGACTGAAGAGTATGTAGACGAGCTGAAAAAGAAAGTACA 2341 Query 2351 GTCTCAGGAGATTGAGAACGAA-AAGTTGAAGCTAGAGCATGTGCAGAGTGTGGAGGAGA 2409 ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| Sbjct 2342 GTCTCAGGAGATTGAGAAC-AATAAGTTGAAGCTAGAGCATGTGCAGAATGTGGAGGAGA 2400 Query 2410 AGAGTGGATTACGAGTGCAAAATCAAAAATTAGCTGAAGAAGCTTCATATGCAAAAGAAT 2469 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 2401 AGAGTGGATTACGAGTGCAAAATCAGAAATTAGCTGAAGAAGCTTCATACGCAAAGGAAT 2460 Query 2470 TGGCCTCTGCAGCTGCTATTGAGCTGAAGAATCTAGCTGATGAAGTTACAAAGCTCTCGC 2529 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2461 TGGCCTCGGCAGCTGCTATTGAGCTGAAGAATCTAGCTGATGAAGTTACAAAGCTCTCGC 2520 Query 2530 TTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGCAGCGGCAGCTC 2589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2521 TTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGCAGCGGCAGCTC 2580 Query 2590 AGAAGCGTAACAACAACTCCATGAACAGCGCAGCGAACCGTAATGGAACAAGGCCAGGGA 2649 ||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||| Sbjct 2581 AGAAGCGTAACAATAGCTCCATGAACAGCGTGGCGAACCGCAATGGAACAAGGCCAGGGA 2640 Query 2650 GAAAGGCAAGGATCTCAGACTCATGGAACCTCAACCAAGAAAATCTCACAATGGAATTGC 2709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2641 GAAAGGCAAGGATCTCAGACTCATGGAACCTCAACCAAGAAAATCTCACAATGGAATTGC 2700 Query 2710 AGGCAAGGAAACAGCGAGAAGCAGTACTTGAGGCTGCACTAGCTgagaaagaatacatag 2769 ||||||| |||||||||||||||||||| |||||| || ||||||||||| ||||||||| Sbjct 2701 AGGCAAGAAAACAGCGAGAAGCAGTACTGGAGGCTACATTAGCTGAGAAACAATACATAG 2760 Query 2770 aagaagagtttaggaaaaaagctgaagaagcaaagagaagagaagagGCCCTTGAAAACG 2829 ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2761 AAGAAGAGTATAAGAAAAAAGCGGAAGAAGCAAAGAGAAGAGAAGAGGCCCTTGAAAACG 2820 Query 2830 ATTTAGCCAACATGTGGGTGCTTGTTGCCAAGTTGAAGAAAGCCAATAGTGGCGCCTTGT 2889 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2821 ATTTAGCCAACATGTGGGTACTTGTTGCCAAGTTGAAGAAAGCCAATAGTGGCGCCTTGT 2880 Query 2890 CAATACAAAAGAGTGACGAAGCAGAGCCTGCAAAGGAAGATGAAGTGACAGAGTTAGATA 2949 ||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| Sbjct 2881 CAATACAAAAGAGTGACGAAGTAGAGTCTGTAAAGGAAGATGAAGCGACAGAGTTAGATA 2940 Query 2950 ATAAGAATGAACAAAATGCAATCTTGAAAGAGAGGCAACTCGTGAATGGACATGAAGAAG 3009 |||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 2941 ATAAGAGTCAACAAAATGCAATCTTGAAAGAGAGGCAAGTCGTGGATGGACATGAAGAAG 3000 Query 3010 TAATAGTTGCCAAGGCTGAAGAGACACCAAAGGAGGAACCTCTTGTTGCTCGTCTTAAGG 3069 ||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||||| Sbjct 3001 TAATAGTTGCCAAGGCTCAAGAGACACTAAAGGAGGAACCCCTCGTTGCTCGTCTTAAGG 3060 Query 3070 CAAGAATGCAAGAGATGAAAGAGAAAGAGATGAAATCTCAGGCGGCTGCAGCAGCTAATG 3129 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 3061 CAAGAATGCAAGAGATGAAGGAGAAAGAGATGAAATCGCAGGCGGCTGCAGCAGCCAATG 3120 Query 3130 CTGATGCAAACTCACATATATGTAAAGTCTGTTTTGAGTCGCCGACCGCCACAATTCTCC 3189 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3121 CTGATGCAAACTCACATATATGTAAAGTCTGTTTTGAGTCGCCGACTGCCACAATTCTCC 3180 Query 3190 TCCCTTGCCGTCATTTCTGCCTCTGTAAATCTTGTTCACTTGCCTGCTCTGAGTGCCCAA 3249 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3181 TCCCTTGCCGTCATTTCTGCCTTTGTAAATCTTGTTCACTTGCCTGCTCTGAGTGCCCAA 3240 Query 3250 TCTGCCGAACCAAGATCTCTGATCGCCTGTTCGCCTTCCCGTCTTGACCTGCGGCAAGTA 3309 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| Sbjct 3241 TCTGCCGAACCAAGATCTCGGATCGCCTGTTCGCCTTCCCGTCTTGACCCGCGACAAGTC 3300 Query 3310 TAGTCACTCTCCTACACACAGTATAAGGTA-TAAAGAACTATATGGAAGTCTGTTTGTTT 3368 ||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||| Sbjct 3301 TAGTCACTCTCCTGCACACAGTATAAGGTAATCAAGAACTATACGGAAGTCTGTTTGTTT 3360 Query 3369 GCTAACATTTTCCAGAACGGCAGGCTCGAATTCTTTTATTACAAGTTGTTTTTTGTTTTC 3428 ||||| |||||||||||||||||||| ||||||||| |||||| ||| |||| ||||| Sbjct 3361 GCTAATATTTTCCAGAACGGCAGGCTAGAATTCTTTCATTACATTTTGGTTTTA-TTTTC 3419 Query 3429 TTGTATGTAATGTCTTTGTTATATCTTTCTGTTCAAAA-TGTGGTAAAGAAAGAGGAAAC 3487 ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||| Sbjct 3420 TTGTATGTAATGTATTTGTTATATCTTCCTATTCAAAAATGTGGTAAAGAAAGAGGAAAC 3479 Query 3488 ATAACATGCTAACAGAAAAATAGGAAACATAT-C-ATAGCCGTTTCATAGTAAGTTCAAA 3545 |||||||||||||||||||| | ||||| | | | |||||||||||||||||| |||| Sbjct 3480 ATAACATGCTAACAGAAAAACA--AAACAAAAGCGAAAGCCGTTTCATAGTAAGTGCAAA 3537 Query 3546 ATTTGAAGTAAGTA-ATTAAAAATTATTTTGCTAATTCATGAAATTT 3591 ||| |||||| || ||| || ||||||||||||||||||||| Sbjct 3538 GTTTAAAGTAA-TAGATTT----TT-TTTTGCTAATTCATGAAATTT 3578 > Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084 Length=3168 Score = 2359 bits (1277), Expect = 0.0 Identities = 2079/2453 (85%), Gaps = 108/2453 (4%) Strand=Plus/Plus Query 195 GCTTCGTCTACTTCTTCGTCTCTTATAAATAATCGTCT-ATTACCTCGTTCTT-CTTCCA 252 ||||| || |||||||| |||| | | | || ||||| ||| |||||||||| | || | Sbjct 49 GCTTCTTCCACTTCTTCTTCTCATCTTAGCAACCGTCTCATT-CCTCGTTCTTGC-TCTA 106 Query 253 CAC-CTACTT-CTACCGTTTA-CAATTCCGGCGGTGTAACCGGGTCCCGATCTATGTCGA 309 | | || ||| || | || | ||| |||| || | || ||| |||||||||||| || Sbjct 107 C-CTCTGCTTCCT--CATTGATCAACTCCGCCGCCGGAATCGGCTCCCGATCTATGACGC 163 Query 310 TTACTCGCACCATT-TCCGATTCCGGTCCCATCGGCGGCTCCGGGA-C-TT---A-TGGA 362 || ||||||| || ||||| || || | || ||||||||||| | || | |||| Sbjct 164 CTAGTCGCACC-TTCTCCGACTCGGGGCTTAT---CGGCTCCGGGAGCTTTGGAATTGGA 219 Query 363 --GCC-CAATCGTACCCATCGGAGGGGC-TCATTGGCGA--GTCTGG-GCAGACGATTAC 415 ||| | | ||||| || || | || || | || || | ||| | |||| |||| Sbjct 220 TCGCCTGTACCTTACCCGTCAGAAGAGCTTC-TCGGTGACCCTATGGAGGAGACTATTAG 278 Query 416 CTCTGAGCGAGATAGCATCTCCGTCACCGTTCGATTTCGTCCGA-TGAGTGAGAGGGAGT 474 ||||||||| ||||| || |||||||||||||| |||||||| | ||||||| || |||| Sbjct 279 CTCTGAGCGGGATAGTATTTCCGTCACCGTTCGTTTTCGTCC-ATTGAGTGATAGAGAGT 337 Query 475 ATCAACGAGGAGATG-AGATTGTTTGGTATCCTGACGCAGATAAGA-TGGTCAGGAATGA 532 ||||| ||||||||| || ||| |||||| ||||| | ||| | | |||||||| | || Sbjct 338 ATCAAAGAGGAGATGAAG-TTGCTTGGTACCCTGATGGTGAT-ACATTGGTCAGGCACGA 395 Query 533 ATACAATCCCCTCACAGCTTACGCATTTGATAAAGTTTTTGGACCAC-AGTCAACAACTC 591 || ||||| ||||| ||||||||||| ||||||||||||||||||| || |||| ||| Sbjct 396 GTATAATCCACTCACTGCTTACGCATTCGATAAAGTTTTTGGACCACAAG-CAACTACTA 454 Query 592 CAGAAGTATATGACGTAGCTGCTAA-ACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAAC 650 || || ||||| |||||||| || ||| |||||||||||||| ||||||||||||||| Sbjct 455 TTGACGTTTATGATGTAGCTGC-AAGACCAGTAGTCAAGGCTGCAATGGAAGGTGTTAAC 513 Query 651 GGAACCGTTTTTGCTTATGGTGTTACAAGCAGTGGAAAGACACATACAATGCATGGTGAT 710 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 514 GGAACCGTTTTTGCTTATGGTGTGACAAGCAGTGGAAAGACACATACAATGCATGGTGAT 573 Query 711 CAAGATTTTCCTGGAATCATACCATTAGCAATAAAAGACGTGTTCAGTATCATTCAGGAA 770 ||||| | |||||| |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 574 CAAGAATCTCCTGGGATCATACCGCTAGCAATAAAAGACGTGTTCAGTATCATCCAGGAT 633 Query 771 ACCACC-GGAAGAGAGTTTCTGCTCCGTGTTTCATATCTTGAAATATACAATGAGGTGAT 829 | | || ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 634 A-CTCCAGGAAGGGAGTTCCTGCTCCGTGTTTCATATCTCGAAATATACAACGAGGTGAT 692 Query 830 AAATGACTTACTGGATCCAACAGGG-CAAAATTTACGTATTAGAGAGGATTCCCAGGGCA 888 |||||| ||||||||||| || ||| |||||||||||| ||||||||||||||||||||| Sbjct 693 AAATGATTTACTGGATCCTAC-GGGCCAAAATTTACGTGTTAGAGAGGATTCCCAGGGCA 751 Query 889 CTTACGTTGAGGGTATCAAGGAAGAAGTCGTTTTGTCTCCAGGCCATGCGTTATCTTTCA 948 |||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| Sbjct 752 CTTATGTTGAGGGTATCAAGGAAGAAGTTGTTTTGTCTCCTGGCCATGCATTATCATTCA 811 Query 949 TTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAACCTGATGAGCAGCA 1008 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 812 TTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAATTTGTTGAGCAGCA 871 Query 1009 GAAGTCACACAATATTTACACTGATGATTGAAAGTAGTGCT-CATGGAGACCAATATGAT 1067 |||||||||| ||||||||||||||| |||||||||||||| | |||||| |||||||| Sbjct 872 GAAGTCACACTATATTTACACTGATGGTTGAAAGTAGTGCTAC-TGGAGATGAATATGAT 930 Query 1068 GGAGTTATTTTTTCTCAGCTAAATTTGATTGACTTAGCTGGATCTGAGAGTTCCAAAACT 1127 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 931 GGAGTTATATTTTCTCAACTCAATTTGATTGACTTAGCTGGATCTGAGAGTTCCAAAACT 990 Query 1128 GAGACAACGGGACTGAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCTGACTCTT 1187 || ||||| ||| |||||||||| |||||| |||||||||||||||||||||| |||||| Sbjct 991 GAAACAACTGGATTGAGGAGGAAGGAGGGTTCATACATCAACAAGAGTCTTCTAACTCTT 1050 Query 1188 GGAACTGTGATTGGAAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCGGGACTCT 1247 |||||||||||||||||||| | |||||| ||| ||||||| | |||| ||| |||||| Sbjct 1051 GGAACTGTGATTGGAAAACTTAGTGAGGGTAAGGCAACTCACATTCCATATCGTGACTCT 1110 Query 1248 AAGCTAACTCGTCTTCTGCAATCTTCACTGAGTGGGCATGGGCATGTATCGCTCATATGT 1307 ||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||| Sbjct 1111 AAGCTAACTCGTCTTCTGCAATCTTCATTAAGTGGTCATGGGCATGTCTCGCTCATATGT 1170 Query 1308 ACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTGCCAGC 1367 ||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1171 ACAATTACTCCTGCGTCGAGCAGTAGTGAGGAAACTCATAATACATTGAAGTTTGCCAGC 1230 Query 1368 AGGGCAAAGAGAATTGAAAT-TAATGCCTCACGCAATAAGATCATAGATGAGAAGTCATT 1426 ||||||||||| || ||||| || ||| ||||||||| |||| ||||||||||||||||| Sbjct 1231 AGGGCAAAGAGTATAGAAATATA-TGCTTCACGCAATCAGATTATAGATGAGAAGTCATT 1289 Query 1427 GATTAAGAAATATCAGAA-AGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAA 1485 |||||||||||||| || ||||||||| ||||||||| | |||||||||||||| |||| Sbjct 1290 AATTAAGAAATATCA-AAGAGAAATCTCAACCCTCAAACTAGAACTTGATCAGCTTAGAA 1348 Query 1486 GGGGTGTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGCTACAAG 1545 ||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||| || ||| Sbjct 1349 GGGGTATGCTTGTTGGTGTCAGTCATGAAGAGTTAATGAGCTTAAAGCAACAGTTAGAAG 1408 Query 1546 AAGGTCAAGTGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAA 1605 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1409 AAGGTCAAGTGAAAATGCAATCAAGATTGGAGGAAGAAGAAGAAGCCAAAGCAGCTCTAA 1468 Query 1606 TGAGTAGAATCCAAAAGCTTACAAAGCTCATACTTGTCTCTACCAAGAATTCTATTCCTG 1665 |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1469 TGAGCAGAATCCAAAAGCTTACCAAGCTCATACTCGTCTCTACCAAGAATTCTATTCCTG 1528 Query 1666 GATATTTAGGTGACACACC-AGCTCATTCT-CGCAG-CATTTCTGCTGGTAAAGATGATA 1722 ||||||| ||||| | ||| | ||||| | ||||| | | ||||||||||||||||||| Sbjct 1529 GATATTTGGGTGATATACCTA-CTCAT-CAACGCAGTC-TCTCTGCTGGTAAAGATGATA 1585 Query 1723 AGTTAGACTCTCTGCTCTTGGATAGTGATAATCTGGCATCTCCATCTTCGACTCTCT--C 1780 | || || ||||| || ||||| |||||| |||||| ||||||||||||||| || | | Sbjct 1586 AATTCGATTCTCTACTGTTGGAAAGTGATCATCTGGGATCTCCATCTTCGAC-CT-TGGC 1643 Query 1781 TCTAGCATCAGATG---C----G-------CGAC-GG---TCTTCCAGCAAGTTTAAGGA 1822 ||| | |||||| | | | | || || ||||| |||||||| || || Sbjct 1644 TCTTGTATCAGAAGGTTCTTTAGGTTTTAACCACAGGCGATCTTCTAGCAAGTTGAATGA 1703 Query 1823 TGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGACTCCCGATGA 1882 |||||||| || | ||| | ||||||| |||||||| || ||||| || ||||| Sbjct 1704 CGAAAACTCACC-G--GGT----G--CAGAATTTACTCAAGGTGTCATGACGCCAGATGA 1754 Query 1883 AATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCACAAG 1942 ||| || || || ||||| ||||||||||||||||||||||||||||||||| | || || Sbjct 1755 AATCGACCTTCTGGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCAGTACGAG 1814 Query 1943 CACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGA-AAACCCAAA 2001 |||||||||||||||||||||||||||| | |||||||| |||||||| | |||| || | Sbjct 1815 CACACTAAAGCGTTTGGTGGATCAGTCCGTAAATGATCCGGAAAACTC-ACAAACTCAGA 1873 Query 2002 TCCAGAATCTAGAAAATGATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGA 2061 | |||||||| ||| || ||||| ||||||||||| ||||||| | ||||||||||| Sbjct 1874 TACAGAATCTGGAACGCGAGATTCACGAAAAGCAAAGGCAAATGAGAGCCTTGGAACAGC 1933 Query 2062 GAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATC-GATTGAGATGCAAGAG 2120 |||| |||||||||||||||||||||||| || ||||||| | ||||||||||| || Sbjct 1934 TCATAATTGAGAGTGGTGAAGCTTCAATTGCCAACGCATCATTAG-TTGAGATGCAACAG 1992 Query 2121 AAAGTTATGAGAT-TGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAGATTATATC 2179 ||||||||||| | ||||||| || ||||||||||||||||||||||||||||| | ||| Sbjct 1993 AAAGTTATGAG-TCTGATGACCCAGTGCAATGAGAAGAGCTTTGAGCTGGAGATCAAATC 2051 Query 2180 AGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAACAATGAATT 2239 ||| |||||| | |||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 2052 AGCTGATAATTGCATTCTCCAAGAACAACTACAGAAAAAGTGTACCGAGAACAAAGAACT 2111 Query 2240 GCACGAAAAGGTGCATCTTCTAGAGCAACGATT-A-T-C-G-A----GTCAGAAGGCCAC 2290 || ||||||||| |||||||||||||||| || | | | | | || |||| || | Sbjct 2112 ACATGAAAAGGTGAATCTTCTAGAGCAACGCTTGAATGCAGTATCTAGTGAGAAATCCTC 2171 Query 2291 ACTGTCTTGTTGTGAT---GTTGTGA-CTGAAGAGTATGTAGATGAGCTGAAAAAGAAAG 2346 || ||||||| ||| | || | ||| |||||||| ||| || || ||||||||| Sbjct 2172 ACCATCTTGTTCCGATAAAGCGGT-ATCTGGAGAGTATGCAGACGAACTAAAAAAGAAAA 2230 Query 2347 TACAGTCTCAGGAGATTGAGAACGAAAAGTTGAAGCTAGAGCATGTGCAGAGTGTGGAGG 2406 |||| || ||||| |||||||||||| ||||||||||||| |||||||| | | |||| | Sbjct 2231 TACAATCACAGGAAATTGAGAACGAAGAGTTGAAGCTAGAACATGTGCAAATTCTGGAAG 2290 Query 2407 AGAAGAGTGGATTACGAGTGCAAAATCAAAAATTAGCTGAAGAAGCTTCATATGCAAAAG 2466 |||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| || | Sbjct 2291 AGAACAGTGGGTTACGAGTACAAAATCAAAAACTAGCTGAAGAAGCTTCATATGCTAAGG 2350 Query 2467 AATTGGCCTCTGCAGCTGCTATTGAGCTGAAGAATCTAGCT-GATGAAGTTACAAAGCTC 2525 | || |||||||| |||||| |||||||||| ||||| ||| | ||||| ||||| ||| Sbjct 2351 AGTTAGCCTCTGCTGCTGCTGTTGAGCTGAAAAATCTTGCTAGC-GAAGTAACAAAACTC 2409 Query 2526 TCGCTTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGC 2578 || || |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2410 TCACTACAAAACACAAAGCTAGAAAAAGAATTAGCAGCTGCAAGAGACTTGGC 2462 > Ahg952455 jgi|Araly1|952455|scaffold_7400001.1 Length=556 Score = 424 bits (229), Expect = 3e-117 Identities = 363/424 (86%), Gaps = 23/424 (5%) Strand=Plus/Plus Query 885 GGCACTTACGTTGAGGGTATCAAGGAAGAAGTCGTTTTGTCTCCAGGCCATGCGTTATCT 944 |||||||||||||| |||| ||||||||||| ||||| ||| |||| |||||| ||| | Sbjct 133 GGCACTTACGTTGAATGTATTAAGGAAGAAGTTGTTTTATCTACAGGACATGCGCTATAT 192 Query 945 TTCATTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAACCTGATGAGC 1004 |||| ||| |||||| ||||||||||||||||||||||||||| | ||||| || || || Sbjct 193 TTCACTGCTGCTGGGAAAGAACATCGTCATGTTGGTTCAAATAGTATCAACTTGTTGGGC 252 Query 1005 AGCAGAAGTCACACAATATTTACACTGATGATTGAAAGTAGTGCTCATGGAGACCAATAT 1064 |||| |||||||||||||||||| | | | | | | ||||||||| |||||||| Sbjct 253 AGCACAAGTCACACAATATTTAC-C-CA--A--G---G-A--GCTCATGGACACCAATAT 300 Query 1065 GATGGAGTTATTTTTTCTCAGCTAAATTTGATTGACTTAGCTGGATCTGAGAGTT-C-C- 1121 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | Sbjct 301 GATGGAGTTATTTTTTCTGAGCTAAGTTTGATTGACTTAGCTGGATCTGAGAGTTCCACG 360 Query 1122 A------AAACTGAGACAACGGGACTGAGGAGGAAAGAGGGTGCATACATCAACAAGAGT 1175 | ||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 361 AGTTCCGAAACTAAGATAACGGGATTGAGGAGGAAAGAGGGTGCATACATCAACAATAGT 420 Query 1176 CTTCTGACTCTTGGAACTGTGATTGGAAAACTGACTGAGGGCAAGACAACTCATGTCCCA 1235 ||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||| Sbjct 421 CTTCTGACTCTTGGAACTGTGATTGGAAAACTGTCTGACGGCAGGACAACTCCTGTCCCA 480 Query 1236 TTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTCACTGAGTGGGCA-TGGGCATGT 1294 ||||| ||||||| ||||||| ||||||| ||||||||| || ||||||| | | ||| | Sbjct 481 TTTCGAGACTCTACGCTAACTTGTCTTCTCCAATCTTCATTGTGTGGGCACTAG-CATAT 539 Query 1295 ATCG 1298 |||| Sbjct 540 ATCG 543 > Ahg949340 jgi|Araly1|949340|scaffold_801227.1 Length=511 Score = 248 bits (134), Expect = 2e-64 Identities = 192/218 (88%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 1091 TTTGATTGACTTAGCTGGATCTGAGAGTT-C-C-A------AAACTGAGACAACGGGACT 1141 ||||||||||||||||||||||||||||| | | | ||||| ||| ||||||| | Sbjct 282 TTTGATTGACTTAGCTGGATCTGAGAGTTCCACGAGTTCCGAAACTAAGATAACGGGATT 341 Query 1142 GAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTGATTGG 1201 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 342 GAGGAGGAAAGAGGGTGCATACATCAACAATAGTCTTCTGACTCTTGGAACTGTGATTGG 401 Query 1202 AAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCT 1261 ||||||| |||| |||| ||||||||||||||||||||| ||||||| ||||||| |||| Sbjct 402 AAAACTGTCTGACGGCAGGACAACTCATGTCCCATTTCGAGACTCTACGCTAACTTGTCT 461 Query 1262 TCTGCAATCTTCACTGAGTGGGCA-TGGGCATGTATCG 1298 ||| ||||||||| || ||||||| | | ||| ||||| Sbjct 462 TCTCCAATCTTCATTGTGTGGGCACTAG-CATATATCG 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136512514351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5