BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21385.4
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932068 jgi|Araly1|932068|scaffold_400056.1 1035 0.0
> Ahg932068 jgi|Araly1|932068|scaffold_400056.1
Length=1033
Score = 1035 bits (560), Expect = 0.0
Identities = 618/646 (96%), Gaps = 3/646 (0%)
Strand=Plus/Plus
Query 69 GTGCGGTGCCTTCACTTTAATGGCGGCAATATCCCCTGTTCAATGCTTATTCTCTTGCAA 128
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2 GTGCGGTGCCTTCACTATAATGGCGGCAATATCCTCTGTTCAATGCTTATTCTCTTGCAA 61
Query 129 TTCTCATCATCATCATCAACAACGCGAGCAGAGTGGGTCGCTTTGGAGATTGGGTTCTAG 188
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 62 TTCTCATCATCATCAT---CAACGCGACCAGAGTGGGTCGCTTTGGAGATTGGGTTCTAG 118
Query 189 GGTTTTAGTATCTTCGAGTCTATGGAAGCTTTCTCTGTTCTCTGGACTCCATTTGAACCG 248
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||
Sbjct 119 GGTTTTAGTATCTTCGAATCTATGGAAGCTTTCTCTGTTCTCTGGATTCAATTTGAAGCG 178
Query 249 AAGGAGAACTTTGATCTGTGCAGTCAAGGGAGATCCAGAAGATGCCTTTAAGAAGACTGT 308
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 179 AAGGAGAACTTTGATCTGTGCAGTCAAGGGAGATCCAGAAGAAGCGTTTAAGAAGACTGT 238
Query 309 CGAAATCGATCGGATGATTGATGCTCTTAGAGATGCAAACCCTAGACAAGTTGAGAAGAT 368
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGAAATCGATAGGATGATTGATGCTCTTAGAGATGCAAACCCTAGACAAGTTGAGAAGAT 298
Query 369 TGTTGTTGAAAATATCCTTGCTTTTGATGAGGTTTTTTGGATAAGACTAGCAGCTAGGTC 428
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 299 TGTTGTTGAAAATATCCTTGCTTTTGATGAGGTTTTTTGGATTAGACTTGCAGCTAGGTC 358
Query 429 GGATACTTGTAAATCAGAAGATGACAAGAAGGACTATGAGGAGTTAGCTACAACTGTGAT 488
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 359 AGATACTTGCAAATCAGAAGATGATAAGAAGGACTATGAGGAGTTAGCTACAACCGTAAT 418
Query 489 GACTATAGTTGACTGTGTTGTGAATAAGACTCGGGAAAAGATAGAGACGTCTACTGATAT 548
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 419 GACTATAGTTGACTGCGTTGTGAATAAGACTCGGGAGAAGATAGAAACGTCTACTGATAT 478
Query 549 TCTGAAAGGGATTTTAAGACCTGCTATAGATGGAGTGGAAGAGATTTCATGGCCGCCAAG 608
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 479 TCTGAAAGGGATTTTAAGACCGGCTATAGATGGAGTGGAAGAGATTTCATGGCCTCCAAG 538
Query 609 AGATCCTGAAGCCATCAATCTAATGAAAAAGGAAATTATACAACGGGAAAAAGAAGGGCA 668
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 539 AGATCCTGAAGCCATCAATCTAATGGAAAAGGAAATAATACAACGGGAAAAAGAAGGGCA 598
Query 669 ATTAGATGAAGGATTTCTTTCAGAAGTTAATGCTCAGCTCCGGCAG 714
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 ATTAGATGAAGGATTTCTTTCAGAAGTTAGTGCTCAGCTCCGGCAG 644
Score = 462 bits (250), Expect = 3e-129
Identities = 275/287 (96%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 945 AGGGAACGAAGTTGTAAAAGCCGAGCATTTTCTTGAAACTCTGATCAAAGCTCCTGAGGA 1004
|||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 746 AGGGAACGAAATTGTTAAAGCCGAGCATTTTCTCGAAACTCTGATTAAAGCTCCTGAGGA 805
Query 1005 ACAATGGAACAAGCTTTTCGTAGACGGGTTAACAATCGGAAAAGGAGATATCACACCTGA 1064
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 806 ACAATGGAACAAGCTTTTCGTAGACGGGTTAACAATCGGGAAAGGAGATATCACACCTGA 865
Query 1065 TGAGCTATCTGCTGTTATCAAGAAACGAATCGAGCGCACACTGATTCGAACTGAAGGGGG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 866 TGAGCTATCTGCTGTTATCAAGAAACGAATCGAGCGCACACTGATTCGAACTGAAGGTGG 925
Query 1125 TTCATACCAGCAGCGAATTTTGACCGAGTATCTCAAAGGAATCGAGTCCAGGGCTAATGA 1184
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TTCATACCAGCAACGAATCTTGACCGAGTATCTCAAAGGAATCGAGTCCAGGGCTAATGA 985
Query 1185 AATTATGAAATTACTCCAGGGTTAATGTC-GTAAATCATGTATTTAT 1230
||||||||||||||| |||||||||| || |||||||||| ||||||
Sbjct 986 AATTATGAAATTACTTCAGGGTTAAT-TCTGTAAATCATGGATTTAT 1031
Score = 198 bits (107), Expect = 8e-50
Identities = 107/107 (100%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 753 CAGGCAAAAGAAGATAAAGACAAACCAGGGTTATTGGCTATGCTGCAAAAAGTTCTTCAA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAGGCAAAAGAAGATAAAGACAAACCAGGGTTATTGGCTATGCTGCAAAAAGTTCTTCAA 701
Query 813 CTCTATTCTGCTACTATCCTCTCCAAGCGTAGCTACGCAAAGAAAGG 859
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTCTATTCTGCTACTATCCTCTCCAAGCGTAGCTACGCAAAGAAAGG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5