BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21600.1 Length=988 Score E Sequences producing significant alignments: (Bits) Value Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1 977 0.0 > Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1 Length=756 Score = 977 bits (529), Expect = 0.0 Identities = 609/648 (94%), Gaps = 4/648 (1%) Strand=Plus/Plus Query 119 TTCTTCACCATCCGTTTCAAGAATAACAATGGAAGGAAGCGGTGGTGACAGTGGTTCGAT 178 ||||| |||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 86 TTCTTTACCATCCGTTGCAAGAATCACAATGGATGGAAGTGGTGGTGACAGTGGTTCGAT 145 Query 179 GGCTACGCCTGTACAAAAGAAAGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 238 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 146 GGCTACACCTGTACAAAAGAAGGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 205 Query 239 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTTGTTTTCTTTCTTATCTA 298 |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 206 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTCGTCGTCTTTCTTATCTA 265 Query 299 CTGTTTGAGGGTTTACTCTATTCACGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 358 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 266 CTGTTTGAGGGTTTACTCTATTCAGGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 325 Query 359 CCTCCTGAATCTGCTTATCGGGTTTTTGTCTCCTCTTGTTGATCCTGAGCTCGAGGT-AT 417 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | Sbjct 326 CCTCCTGAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAGCTCGAAGTCA- 384 Query 418 CTGATGGAGCTACTCTGCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGCCGTC 477 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 385 CTGATGGAGCTACTCTCCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGTCGAC 444 Query 478 TCCCGGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCCTTTCTTATGA 537 | || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 445 TGCCAGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCATTTCTCATGA 504 Query 538 CATTCTTCTCGGTGTTTGATGTTCCCGTCTTCTGGCCCATACTGCTTTGCTACTGGGTCG 597 | ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||| | Sbjct 505 CGTTCTTCTCGGTCTTTGACGTTCCCGTCTTCTGGCCTATATTACTTTGCTACTGGGTTG 564 Query 598 TTCTCTTTGTCCTCACCATGAGACGCCAAATAGCCCACATGATCAAGCACAAGTACATTC 657 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 565 TTCTCTTTGTCCTCACCATGAGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTC 624 Query 658 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAAATCTTCTGCGAACAGCGGCGGCG 717 |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 625 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAGATCTTCTGCGAGCAGCAGCGGCG 684 Query 718 GCTCTCGTGCTGATTGATTTCAACTTG-CAGCCACATTTTCTGCAGAA 764 ||||||||||||||||||||| | ||| ||||||| || ||||||||| Sbjct 685 GCTCTCGTGCTGATTGATTTCGA-TTGTCAGCCACGTTCTCTGCAGAA 731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36712369071 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5