BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21620.2
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481030 jgi|Araly1|481030|fgenesh2_kg.4__90__AT2G21620.2 1338 0.0
> Ahg481030 jgi|Araly1|481030|fgenesh2_kg.4__90__AT2G21620.2
Length=974
Score = 1338 bits (724), Expect = 0.0
Identities = 927/1017 (91%), Gaps = 45/1017 (4%)
Strand=Plus/Plus
Query 13 AAATCAAATTCTCTACACGCAACTTTCTTTCAAATACAAAACCAATCATCTCGATTCATC 72
||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1 AAATCAAATTCTCTACACGCAACTTTCTTTCAAAT------CC-A--ATCTCGATTCATT 51
Query 73 CAACCCGCGAAGACCCAGAAACCAAAATCGAAGACCCAACAAAACCCA-CAAGTCGAAAT 131
|||||| ||||||||||||||| |||||||||||||||| ||||||| || || ||||
Sbjct 52 GAACCCGTGAAGACCCAGAAACCGAAATCGAAGACCCAACGAAACCCATTAA-TCAAAAT 110
Query 132 CTCGAAATCCGTTGAGAGTTTGTTCCtttttttGTTTGCTCGGAGATGGAGGCTTTGCCG 191
||||||||||||||| |||||||||| |||||| | ||||||||||||||||| |||
Sbjct 111 CTCGAAATCCGTTGAAAGTTTGTTCC--TTTTTG---G-TCGGAGATGGAGGCTTTACCG 164
Query 192 GAGGATGAAGAGTACAGTTTCAGGGAAGTAGTGTTGCCGTCTTTGATTCCGGTAGTGCCG 251
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
Sbjct 165 GAGGATGAAGAGTACAGTTTCAGGGAAGTGGTGTTGCCGTCGTTGATTCCGGTAGTACAG 224
Query 252 GAGCCGGAACTTgagagagagagcggagagaggagaagaggaagagaTGTTATCGTAGCC 311
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 225 GAGCCGGAACTAGAGAGAGAGAGCGGAGAGAGAAGAAGAGGAAGAGATGTAATCGTAGCC 284
Query 312 GTTGATCATGGTCCCAATAGCAAACACGCTTTTGATTGGGCTCTTGTTCATTTCTGTCGT 371
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 285 GTTGATCATGGTCCCAATAGCAAACACGCCTTTGATTGGGCTCTCGTTCACTTCTGTCGT 344
Query 372 CTCGCCGATACTCTCCATCTTGTCCACGCCGTCTCAAGTTCGTTCTCTCTTCAATGTGTT 431
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTCGCCGATACTCTCCACCTAGTCCACGCCGTCTCAAGTTCGTTCTCTCTTCAATGTGTT 404
Query 432 AAGAACGATGTTGTGTATGAGACGAGCCAAGCCCTCATGGAGAAACTTGCTGTTGAGGCG 491
|||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 405 AAGAACGATGTTGTGTATGAGACGAGCCAAGCTCTCATGGAGAAACTAGCTATTGAGGCG 464
Query 492 TATCAAGTTGCCATGGTAAAGAGTGTGGCTCGTGTTGTTGAAGGCGATGCTGGTAAAGTA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TATCAAGTTGCCATGGTAAAGAGTGTGGCTCGTGTTGTTGAAGGCGATGCTGGTAAAGTA 524
Query 552 ATCTGCAAGGAAGCAGAGAAAGTGAAGCCTGCTGCTGTGATTGTAGGCACACGAGGCAGG 611
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 525 ATCTGCAAGGAAGCAGAGAAAGTGAAGCCTGCTGCTGTAATTTTGGGCACACGAGGCAGG 584
Query 612 AGCTTAGTAAGAAGCGTGCTACAGGGGAGCGTAAGCGAGTATTGTTTCCACAATTGCAAA 671
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 585 AGCTTAGTAAGAAGCGTGCTACAAGGGAGCGTAAGCGAGTATTGTTTCCACAATTGCAAA 644
Query 672 TCTGCTCCTGTCATAATCGTTCCTGGAAAAGAAGCTGGAGACGAGTCGATCGTGGACTGG 731
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 645 TCCGCTCCCGTCATAATCGTTCCTGGGAAAGAAGCTGGAGACGAGTCGATTGTGGACTGG 704
Query 732 ACACGCTCAGAAGATCCTAAACCCTGAAGAAAAAGTTCAAGTGTTGTTTCCACGAAGACT 791
||||| ||||||||||| ||||||||||||||| |||||| | || | |||||||||||
Sbjct 705 ACACGTTCAGAAGATCCAAAACCCTGAAGAAAA-GTTCAACTATT-T--CCACGAAGACT 760
Query 792 GTTTTGTTTTTCATCTTTCTGTCGCTACTGTTGCAGTCTTTGTTTCTGTATGTCCCTAAA 851
|||||||||||||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 761 GTTTTGTTTTTCATCTTTCTTTCGCTATTGTTGCAGTCTTTGTTTCTGTATG-C--T--- 814
Query 852 AATCTTAGATTGCTTCTTCTTCGTCTCTCTGTGTGTGTATGTGTTTTGATTTGGGTTTTT 911
|||| |||| ||| | | | | |||||||||||||||||||||||||||||
Sbjct 815 --TCTT------CTTCGTCT-C-T-T-T--GTGTGTGTATGTGTTTTGATTTGGGTTTT- 859
Query 912 GTAGTTTCAAAATTTCTGTATAAAACCTTTGCTCAGGAATGAA-TGTATTGTATGCAATG 970
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 860 GTAGTTTCAAA-TTTCTGTATAAAACCTTTGCTCAGGAATGAAAT-TATTGTATGCAGTG 917
Query 971 GTGTGATGTGTTTCAGACTTTTCAGTAAACAAGCCTATAGCAGACACTATTTCTTTT 1027
|||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 918 GTGTCATGTGTTTCAGACTTTTCACTAAACAAATCTATAGCAGAAACTATTTCTTTT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5