BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21650.1 Length=614 Score E Sequences producing significant alignments: (Bits) Value Ahg481032 jgi|Araly1|481032|fgenesh2_kg.4__92__AT2G21650.1 841 0.0 > Ahg481032 jgi|Araly1|481032|fgenesh2_kg.4__92__AT2G21650.1 Length=603 Score = 841 bits (455), Expect = 0.0 Identities = 550/591 (93%), Gaps = 25/591 (4%) Strand=Plus/Plus Query 34 ACACAAAACCAAACATCATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT 93 |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 24 ACACAAAACC-AA-A-CATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT 80 Query 94 CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG 140 Query 154 TCTATGACCAAGACACTCCGGACCGTTGGCACAATGTTGCTAGAGCTGTTGGTGGTAAAA 213 ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| Sbjct 141 TCTATGACCAAGACACTCCTGACCGTTGGCACAATATTGCTAGATCTGTTGGTGGTAAAA 200 Query 214 CACCAGAAGAAGCTAAGAGACAGTATGACCTTCTAGTTCGTGACATCGAAAGCATCGAGA 273 |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 201 CACCAGAAGAAGCTAAGAGACAATATGACCTTCTCGTGCGTGACATCGAAAGCATCGAGA 260 Query 274 ATGGTCACGTGCCATTCCCTGACTACAAGACTACTACAGGAAACAGCAACAGAGGCAGGC 333 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 261 ATGGTCACGTGCCGTTCCCTGACTACAAGACTACTACTGGAAACAGCAACAGAGGCAGGC 320 Query 334 TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAGACAAGAAGCAACAAA 393 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 321 TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAAACAAGAAGCAACAAA 380 Query 394 AC---------CTAACTACGTATGATCGTCAA-AA--TAAAAGAGAATCACTTCAGAGAG 441 | ||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 381 AAAAAAAAAAACTAACTACGTATGATCGTCAAGAAAATAAAAGAGAATCACTTCAGAGAG 440 Query 442 ATGTGtttttttCAATGTCTGACGAATCAATGttttttt-CTTGCAATTTCTCATGTTTT 500 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 441 ATGTGTTTTTTTCGATGTCTGACGAATCAATGTTTTTTTTCTTGCAATTTCTCATGTTTT 500 Query 501 TCCCTAAGAAATGGtttttttttC-GAGGCAACaaaaaaaaaaTAACACTCGAATTTGTT 559 ||||||||| |||||||||||| ||||||| |||||| |||||||||| ||| Sbjct 501 -CCCTAAGAATTGGTTTTTTTTTTTGAGGCAA-AAAAAAG------CACTCGAATTAGTT 552 Query 560 AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCAATGTCTAAA 610 |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 553 AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCATTGTCTAAA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22454398113 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5