BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21820.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481046 jgi|Araly1|481046|fgenesh2_kg.4__106__AT2G21820.1          396    6e-110
  Ahg909552 jgi|Araly1|909552|Al_scaffold_0002_2633                   65.8    2e-10 


> Ahg481046 jgi|Araly1|481046|fgenesh2_kg.4__106__AT2G21820.1
Length=319

 Score =  396 bits (214),  Expect = 6e-110
 Identities = 242/256 (95%), Gaps = 0/256 (0%)
 Strand=Plus/Plus

Query  18   TATCATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAACGGCGACAA  77
            |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  1    TATCATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAAGAACGGCGACAA  60

Query  78   CGTACGAGTCAGTGGAAGGAGGACAGAACAAGACGAAGCTTGATATAAGGTCAAAGGAAG  137
            ||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct  61   CGTACGAATCGGTGGAAGGAGGACAAAACAAGACGAAGCTTGATATAAAGTCAAAGGAAG  120

Query  138  ACGAAGGTGGGATTCAAGTTGACAAGCTTCAAGACAAGGTCTCTGATGCTGCTGGTCTTG  197
            |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  121  ACGAAGGTGGAATTCAAGTTGACAAGCTTCAAGACAAGGTCTCAGATGCTGTTGGTCTTG  180

Query  198  GCGGACCTGTCTTTGGTGCTGGTAAAGACGACAAGAAGCAGGATCTTGGTGTTACCGGTA  257
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  181  GCGGACCTGTGTTTGGTGCTGGTAAAGATGACAAGAAGCAGGATCTTGGTGTTACCGGTA  240

Query  258  CCGGCTAGGTCTCTGT  273
            | |||||| |||||||
Sbjct  241  CTGGCTAGATCTCTGT  256


> Ahg909552 jgi|Araly1|909552|Al_scaffold_0002_2633
Length=2262

 Score = 65.8 bits (35),  Expect = 2e-10
 Identities = 44/48 (92%), Gaps = 1/48 (2%)
 Strand=Plus/Plus

Query  22    ATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAAC  69
             |||||| |||||||||||||||||||||||||||||||  |||| |||
Sbjct  2066  ATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAA-AAC  2112



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5