BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21820.1 Length=363 Score E Sequences producing significant alignments: (Bits) Value Ahg481046 jgi|Araly1|481046|fgenesh2_kg.4__106__AT2G21820.1 396 6e-110 Ahg909552 jgi|Araly1|909552|Al_scaffold_0002_2633 65.8 2e-10 > Ahg481046 jgi|Araly1|481046|fgenesh2_kg.4__106__AT2G21820.1 Length=319 Score = 396 bits (214), Expect = 6e-110 Identities = 242/256 (95%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 18 TATCATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAACGGCGACAA 77 |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TATCATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAAGAACGGCGACAA 60 Query 78 CGTACGAGTCAGTGGAAGGAGGACAGAACAAGACGAAGCTTGATATAAGGTCAAAGGAAG 137 ||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 61 CGTACGAATCGGTGGAAGGAGGACAAAACAAGACGAAGCTTGATATAAAGTCAAAGGAAG 120 Query 138 ACGAAGGTGGGATTCAAGTTGACAAGCTTCAAGACAAGGTCTCTGATGCTGCTGGTCTTG 197 |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 121 ACGAAGGTGGAATTCAAGTTGACAAGCTTCAAGACAAGGTCTCAGATGCTGTTGGTCTTG 180 Query 198 GCGGACCTGTCTTTGGTGCTGGTAAAGACGACAAGAAGCAGGATCTTGGTGTTACCGGTA 257 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 GCGGACCTGTGTTTGGTGCTGGTAAAGATGACAAGAAGCAGGATCTTGGTGTTACCGGTA 240 Query 258 CCGGCTAGGTCTCTGT 273 | |||||| ||||||| Sbjct 241 CTGGCTAGATCTCTGT 256 > Ahg909552 jgi|Araly1|909552|Al_scaffold_0002_2633 Length=2262 Score = 65.8 bits (35), Expect = 2e-10 Identities = 44/48 (92%), Gaps = 1/48 (2%) Strand=Plus/Plus Query 22 ATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAAC 69 |||||| ||||||||||||||||||||||||||||||| |||| ||| Sbjct 2066 ATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAA-AAC 2112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12934744671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5