BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21890.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320022 jgi|Araly1|320022|fgenesh1_pm.C_scaffold_4000079 1784 0.0
Ahg943905 jgi|Araly1|943905|scaffold_700134.1 710 0.0
> Ahg320022 jgi|Araly1|320022|fgenesh1_pm.C_scaffold_4000079
Length=1128
Score = 1784 bits (966), Expect = 0.0
Identities = 1075/1129 (95%), Gaps = 2/1129 (0%)
Strand=Plus/Plus
Query 1 ATGGTAGATCAAAATAGAGCATTTGGTTGGGCGGCCAACGACGAATCGGGCGTCCTCTCT 60
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGTAGATCGAAATAAAGCATTTGGTTGGGCGGCCAACGACGAATCTGGCGTCCTCTCT 60
Query 61 CCATTTCATTTCTCTAGAAGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTC 120
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 61 CCATTTCATTTCTCTAGAAGAGAAAATTGTGAGAACGATGTAACAGTGAAAATCTTGTTC 120
Query 121 TGTGGTGTTTGTCACTCTGATCTTCATACCATCAAGAACCATTGGGGATTCTCTCGTTAC 180
|||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||
Sbjct 121 TGTGGTGTTTGTCACTCTGATCTTCACACCATCAAAAACCACTGGGGAATCTCTCGTTAC 180
Query 181 CCCATTATTCCCGGGCATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGACA 240
||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 CCCGTTGTTCCCGGGCATGAAATCGTTGGAATAGCTACAAAAGTTGGTAAGAATGTGACA 240
Query 241 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCCAATCATGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCGAATCATGT 300
Query 301 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTAAAGTCGTTTTCACATACAACTCT 360
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 301 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTGAAGTCGTTTTTACATACAACTCT 360
Query 361 CGTTCCTCTGACGGAACCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTTCCTCTGACGGAACCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCAC 420
Query 421 CGCTTTGTCCTAAGCATTCCCGACGGTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGT 480
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 421 CGCTTTGTCCTAAGCATTCCCGATGGTTTACCAAGCGATGCAGCCGCGCCGCTGCTCTGT 480
Query 481 GCTGGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAA 540
|||||||| |||||||||||||| ||||| |||||||| |||||| ||||||||||||||
Sbjct 481 GCTGGAATTACTGTGTACAGTCCAATGAAATATTATGGTATGACTGAAGAATCAGGGAAA 540
Query 541 CGTTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCC 600
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CATTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTGAAGATTGGTAAAGCC 600
Query 601 TTTGGTTTAAGAGTTACTGTGATTAGTAGGTCATCAGAGAAAGAGAGAGAAGCAATTGAT 660
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 601 TTTGGTTTAAGAGTTACTGTGATGAGTAGGTCATCAGAGAAAGAGAGGGAAGCTATTGAT 660
Query 661 CGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGAAGCAGTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGATGCAACA 720
Query 721 GGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTACCTTTGTTT 780
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 721 GGAACTATGGATTTCGTTATCGATACCGTATCAGCAGAACATGCTCTATTACCGTTGTTT 780
Query 781 AGTTTGCTTAAAGTGAGTGGAAAGCTTGTGGCTTTAGGCTTGCTGGAGAAGCCACTCGAC 840
|||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||
Sbjct 781 AGTTTGCTTAAAGTGAGTGGAAAGCTTGTGACTTTAGGCTTACCGGAGAAGTCACTCGAG 840
Query 841 CTGCCAATTTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGG 900
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTACCAATCTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGG 900
Query 901 ATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAATCGTTTCGGATATT 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 ATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAATATCGTTTCGGATATT 960
Query 961 GAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGTTAAATCTGATGTC 1020
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 GAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGCTAAATCTGATGTC 1020
Query 1021 AGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTACTCCCTGAGTCGTCAGCTGAGATT 1080
|||||||||||||||||||||||||||||||||||| || |||| || |||||||||| |
Sbjct 1021 AGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTAGTCACTGACTCATCAGCTGAGAAT 1080
Query 1081 TTA-ACGGAGCATGTCGACCATGGAGTCTCGATCACGTCTAGATTCTGA 1128
||| | ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 TTAGA-GGATCATGTCGACCATGGAGTCTCAATCACGTCTAGATTCTGA 1128
> Ahg943905 jgi|Araly1|943905|scaffold_700134.1
Length=1148
Score = 710 bits (384), Expect = 0.0
Identities = 845/1060 (80%), Gaps = 61/1060 (6%)
Strand=Plus/Plus
Query 22 TTTGGTTGGGCG-GCCA-ACGACGAAT-CGGGCGTCCTCTCTCCATTTCATTTCTCTAGA 78
|||||||||| | || | | ||| ||| ||| | | |||||||| ||||| |||||||||
Sbjct 85 TTTGGTTGGG-GTGCTAGA-GACAAATCCGGTC-TTCTCTCTCCTTTTCACTTCTCTAGA 141
Query 79 AGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTCTGTGGTGTTTGTCACTCT 138
||||| |||||||| || ||||| ||||||||||||||||| ||||| ||||| ||| ||
Sbjct 142 AGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTTTGTGGAGTTTGCCACACT 201
Query 139 GATCTT-CATACCATCAAGAACCATTGGGGATTCTC-TCGTTACCCCATTA-TTCCCGGG 195
||| || || |||||||| || | ||||||| | | | ||| |||| || |||| |||
Sbjct 202 GAT-TTACACACCATCAAAAATGACTGGGGATACACGT-ATTA-CCCAGTAGTTCCAGGG 258
Query 196 CATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGAC-AAAGTTTAAAGAAGG 254
|||||||||||||| || || ||||||||||| ||||| ||||| ||| || ||||||||
Sbjct 259 CATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAA-TTCAAAGAAGG 317
Query 255 AGACCGAGTAGGAGTAGGCGTAAT-AATCGGTTCATGCCAATCATGTGAATCATGTAACC 313
||| || || || ||||| || || | | ||||| ||||| || || ||||| ||| |||
Sbjct 318 AGATCGTGTCGGTGTAGGAGTGATCACT-GGTTCGTGCCAGTCTTGCGAATCTTGTGACC 376
Query 314 AAGA-CTTAGAAAACTATTGTCCT-AAAGTCGT-TTTCACATACAACTCTCG-TT-CCTC 368
|||| ||| ||||| || |||||| ||| | || |||||||||||| | || || ||
Sbjct 377 AAGATCTT-GAAAATTACTGTCCTCAAA-T-GTCTTTCACATACAA-T-GCGATTGGATC 431
Query 369 TGACGGAACC-AGAAACCAAGGTGGTTATTCCGACGTA-ATTGTTGTCGATCACCGCTTT 426
|| |||||| || || | ||||| ||||| || | | ||||| || || || || |||
Sbjct 432 CGATGGAACCAAG-AATTACGGTGGCTATTCGGA-GAACATTGTGGTTGACCAACGGTTT 489
Query 427 GTCCTAAGCATTCCCGACG-GTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGTGCTGG 485
|| | | ||||||| | ||||||||||||||| || |||||| |||| ||||||||
Sbjct 490 GTATTGCGGTTTCCCGA-GAATTTACCAAGCGATTCGGGTGCGCCGTTGCTGTGTGCTGG 548
Query 486 AATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAACGTTT 545
||| |||||||| ||||| |||||||||||||| |||||| || ||||||| | |||
Sbjct 549 AATTACTGTGTATAGTCCAATGAAGTATTATGGTATGACT---GAGGCAGGGAAGCATTT 605
Query 546 AGGTG-TGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCCTTT- 603
|||| || |||||||||||| ||||||||| | |||||||||||||||||||| |||
Sbjct 606 GGGTGTTG-CTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTTTG 664
Query 604 GGTTTAAGAGTTACTGTGATTAGTAGGTCATC-AGAGAAAG-AGAGAGAAGCAATTGATC 661
|||| || |||||||||||||||| || || | |||||| |||| ||||| ||| |||
Sbjct 665 GGTTGAA-AGTTACTGTGATTAGTTCTTCTTCTA-AGAAAGAAGAG-GAAGCCATTAATC 721
Query 662 GA-CTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCA-AAAGATGAAGGAAGCAGT 719
| || |||||||||||||||||||| ||||| ||| |||| ||| ||||||| ||| |
Sbjct 722 -ATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAA-ATGAAGGCTGCAAT 779
Query 720 TGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTA-CCTTTGT 778
|||||| ||||| | ||||||||| || ||||||||| ||||||||| || || |||
Sbjct 780 TGGAACAATGGACTACATTATCGACACAATATCAGCAGTACATGCTCT-GTATCCGTTGC 838
Query 779 TTAGTTTGCTTAAAGTGAGTGGAAAGCTTGTGGCTTTAGGCTT-GCTGGAGAAGCCACTC 837
| | || || ||||| | |||||||| | ||||||||||| || |||||||| ||
Sbjct 839 TCGGGTTACTCAAAGTCAACGGAAAGCTCATCGCTTTAGGCTTACCT-GAGAAGCCTCTA 897
Query 838 GACCTGCCAATTTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCA-GATTGG 896
|| || ||||| |||||||| |||||||||||||||||||||||||||||| | | | ||
Sbjct 898 GAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTGGGAGGAAGTGACG-TGGG 956
Query 897 AGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAAT--CGTTTCG 954
|||| |||||||||||||||| |||||||| ||||| || ||||| || || || | |
Sbjct 957 AGGGTTGAAGGAGACACAAGAAATGCTTGATTTCTGCGCTAAGCACAACATTACGGCT-G 1015
Query 955 GATATTGAGCTCATAAAGATG-AGTGATATCAACTCTGCGATGGACCGT-TTGGTTAAAT 1012
|||||||| | || |||||| | ||| || |||||||| ||||| | ||| | || |
Sbjct 1016 -ATATTGAGTTGATTAAGATGGA-TGAGATTAACTCTGCTATGGAGAGACTTGCT-AAGT 1072
Query 1013 CTGATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTC 1052
||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1073 CTGATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTC 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5