BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21960.1 Length=1280 Score E Sequences producing significant alignments: (Bits) Value Ahg932140 jgi|Araly1|932140|scaffold_400128.1 1679 0.0 > Ahg932140 jgi|Araly1|932140|scaffold_400128.1 Length=1049 Score = 1679 bits (909), Expect = 0.0 Identities = 1005/1051 (96%), Gaps = 7/1051 (1%) Strand=Plus/Plus Query 121 TTTTCTTGAGAACtttttttGAAG-AGTTATGATTGCATTAGCTGCTTCTTCGTTGGGGA 179 |||||||||||| |||||||||| || ||||||||||||| ||| |||||||||||||| Sbjct 2 TTTTCTTGAGAA--TTTTTTGAAGAAG-TATGATTGCATTAACTGTTTCTTCGTTGGGGA 58 Query 180 ATACACCGATTGCTTCGTTTAACCGTCATTTTAGATTCCGGTTACATCCACGAAACCCTC 239 |||| ||||||||| |||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 59 ATACTCCGATTGCTACGTTTAACCGGCGTTTCAGATTCCGGTTACATCCACGAAACCCTC 118 Query 240 TGATACAAGCAGCGGTTTCACCTTCGTC-T--TCTTCTTCTTCTCCTACTGCTTCATCTG 296 |||||||||||||||||| ||||| || | ||||||||||||||||||||| |||||| Sbjct 119 CGATACAAGCAGCGGTTTCTCCTTCTTCATCCTCTTCTTCTTCTCCTACTGCTGCATCTG 178 Query 297 GCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 356 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GGTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 238 Query 357 AAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATC 416 ||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||| Sbjct 239 AAGCTCTAGATAAATTGAATGAACAAGGTTGGGCTAAGAAATGGAGTTCCCAGCCGTATC 298 Query 417 TTTCGCGCCGTACGACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGA 476 ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 299 TTTCGCGCCGTACGACATCGCTTCGGGAGCTGACAACTCTCGGAATCAAGAATGCAGAGA 358 Query 477 CTCTGGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACAGTAGTCGGATCAA 536 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 359 CTCTTGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACGGTAGTCGGAACAA 418 Query 537 CTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 596 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CCGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 478 Query 597 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGGCTTC 656 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 479 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCTGTGGGAAGCGTTTCACCAGGGCTTC 538 Query 657 TTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCAAGAACGAATTGCTG 716 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 539 TTCAAGCTGCGATTTCCGGGTTTTCTACGTTCTTCCCTGATTATCAAGAAAGAATTGCTG 598 Query 717 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGGCTTCCAATCCTCGGGTACT 776 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 599 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGACTTCCAATCCTCGGGTACT 658 Query 777 CGTTAGACATCGGTAAAGAACATGTCAATCTCATTGACGAGAGACTAGCTAAACTAATAT 836 | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 659 CCTTAGACATCGGTAAAGAACACGTCAATCTCATCGACGAGAGACTAGCTAAACTAATAT 718 Query 837 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 778 Query 897 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTC 956 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 779 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTGATCGGCCAATCTGCAGATCTCTTCTCTC 838 Query 957 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 898 Query 1017 CAAGATGGGCTGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAG 1076 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 899 CAAGATGGGCTGTTCTCTACTCTGCTTCTCTTCTCAAAAACAACAAGAACATCCATGAAG 958 Query 1077 CTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAACCATTGAGA 1136 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 959 CTCTAATGGCTGCAATGTCCAAAAATGCAACTGTTCTTGAATGCATTCAAACCATCGAGA 1018 Query 1137 CAGCTTCCTAGATGAACAATCTCTGTTATCT 1167 ||||||||||||| ||||||||| ||| ||| Sbjct 1019 CAGCTTCCTAGATAAACAATCTCGGTTCTCT 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47844260835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5