BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21970.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481062 jgi|Araly1|481062|fgenesh2_kg.4__122__AT2G21970.1 977 0.0
> Ahg481062 jgi|Araly1|481062|fgenesh2_kg.4__122__AT2G21970.1
Length=768
Score = 977 bits (529), Expect = 0.0
Identities = 631/679 (93%), Gaps = 11/679 (2%)
Strand=Plus/Plus
Query 1 AAATTCTCACTTTACTCAAAAGATTCCTCGGATCATCAGAAAATGGCTATGGCTACGCGA 60
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAATACTCACTTTCCTCAAAAGATTCCTCGGATCATCAG-AAATGGCTATGGCTACGCGA 59
Query 61 GCGATTCGATACCAGTTACCGTCACCGAGAT-TTAGAGCTCCTAGATGCGAATCATCGGA 119
|||||||| | |||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct 60 GCGATTCGTTGCCAGTTACCGTCACCGAGATCTT-TATCTCCTAGATGCGAGTCATCGGA 118
Query 120 ACCGATTAAGCAGATTCAGATCCAGCAACGACCAAGAGGTGGCGATTTAGCCGAGAACGG 179
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACCAATCAAGCAGATTCAGATACAGCAACGACCAAGAGGTGGCGATTTAGCCGAGAACGG 178
Query 180 GAAGATCGTGCTCCAACCAAGGCTTTGCACGCTGAGATCTTATGGATCTGATATGGTCAT 239
|||||||||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAGATCGTGCTTCAGCCGAGACTTTGCACGCTGAGATCTTATGGATCTGATATGGTCAT 238
Query 240 CGCTAAAAAGGACGGCGGAGATGGTGGAGGAGGAGGATCTGATGTTGAG-T-T-AGCGTC 296
||||||||| ||||||||||||||| |||||||||||||| |||||| | | | ||||
Sbjct 239 CGCTAAAAAAGACGGCGGAGATGGT---GGAGGAGGATCTGAGGTTGAGTTATCATCGTC 295
Query 297 TCCGTTTTTTGAGACGCTTACGGATTACATAGAGAGTTCGAAGAAGAGTCAGGA-TTTCG 355
||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
Sbjct 296 TCCGTTTTTTGAGACGCTTACTGATTACATAGAGAGTTCGAAGAAGAGTCAAGACTTT-G 354
Query 356 AAACCATCTCCGGTAGACTCGCCATGATTGTATTTGCGGTGACGGTGACGGAGGAGATTG 415
|||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 355 AAACCATCTCTGGAAGACTCGCCATGATTGTGTTTGCGGCGACGGTGACGGAGGAGATTG 414
Query 416 TTACGGGGAACTCGTTGTTTAAGAAACTAGATGTGGAAGGATTGAGTGAAGCTATTGGAG 475
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 TTACGGGGAATTCGTTGTTTAAGAAACTTGATGTGGAAGGATTGAGTGAAGCTATTGGAG 474
Query 476 CTGGTCTCGCCGCGATGGGATGCGCGGCGATGTTTGCTTGGTTAACGATTTCTCGGAACA 535
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 475 CTGGTCTCGCCGCGATGGGATGCGCGGCGATATTCGCGTGGTTAACGATTTCTCGGAACC 534
Query 536 GAGTCGGACGGATCTTTACAGTGAGTTGCAACTCGTTCATTGACTCGTTGGTTGATCAGA 595
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 535 GAGTTGGACGGATCTTTACAGTGAGTTGTAACTCGTTTATTGACTCGTTGGTTGATCAGA 594
Query 596 TCGTTGATGGACTGTTCTACGATACCAAGCCTAGTGATTGGTCTGATGATCTTTAAGTTC 655
|||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 595 TCGTTGATGGGTTGTTCTATGACACAAAGCCTAGTGATTGGTCTGATGATCTTTAAGTTC 654
Query 656 ATAAATGATAAATACCACT 674
|||||||||||||||||||
Sbjct 655 ATAAATGATAAATACCACT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5