BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22170.1 Length=788 Score E Sequences producing significant alignments: (Bits) Value Ahg932181 jgi|Araly1|932181|scaffold_400169.1 1011 0.0 Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1 427 5e-119 > Ahg932181 jgi|Araly1|932181|scaffold_400169.1 Length=593 Score = 1011 bits (547), Expect = 0.0 Identities = 573/586 (98%), Gaps = 0/586 (0%) Strand=Plus/Plus Query 60 TACATCCATATCACCGATGATGCCTCGCCGTGACGTCCTCTTCCTCTCACTCCTCCTCGT 119 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 6 TACATCCATATCACCGATGATGCCTCGCCGTGACGTTCTCTTCCTCTCCCTCCTCCTCGT 65 Query 120 CATCGCCACCGTCTCCGCTGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATT 179 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 66 CATCGCCACCGTCTCCGCCGTCGCATTCGCCGACGATGAAGCAGATTGTGTCTACACATT 125 Query 180 CTTCCTTAGAACCGGATCAACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 239 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 126 CTACCTTAGAACCGGATCAATCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 185 Query 240 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 245 Query 300 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 305 Query 360 ATGTCTTCCGAGCCCAGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCA 419 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 306 GTGTCTTCCGAGCCCAGTCTGTTCATTGAATCTGACCTCTGACGGCTCCGGTGACCACCA 365 Query 420 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 425 Query 480 CCAAAGCTTTGATGTTGAGCAATGGCTTGCGTCCGATACATCGCCGTATGAGCTCAGTGC 539 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 426 CCAAAGCTTCGATGTTGAGCAATGGCTTGCCTCCGATACATCGCCGTATGAGCTCAGTAC 485 Query 540 TGTTCGGAATAACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 599 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 486 TGTTCGGAATAACTGTCCGGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 545 Query 600 CCGGAAGACTCTCTCTTGGATCGTGTGAGAGTAGTGAATGAAATGT 645 |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 546 CCGGAAGACTCTCTCTTGGATCGTGTGAGATTAGTGAATGAAATGT 591 > Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1 Length=656 Score = 427 bits (231), Expect = 5e-119 Identities = 449/553 (81%), Gaps = 19/553 (3%) Strand=Plus/Plus Query 79 ATGCCTCGCCGTGACGTCCT-CTTCCTCTCACTCCTCCTCGTCATCGCCACCGTCTCCGC 137 ||| ||||||| ||||| | || ||| || |||||||| || |||||||||||||||| Sbjct 32 ATGGCTCGCCGCGACGTTGTCCTCCCTTTC-CTCCTCCT--TC-TCGCCACCGTCTCCGC 87 Query 138 TGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATTCTTCCTTAGAACCGGATC 197 || || || ||||| || || |||| ||||| |||||||||| ||| ||||||||||| Sbjct 88 CGTAGCTTTCGCCGAAGACGATCCAGACTGTGTTTACACATTCTACCTAAGAACCGGATC 147 Query 198 AACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGA 257 | || |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || Sbjct 148 GATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAGTCTACGATAAGTACGGTGA 207 Query 258 CTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTA 317 ||||||||| ||| |||||| |||| |||||||| ||||||||||| | |||||| || Sbjct 208 CTACATCGGAATCAAAAACCTTCAAGCTTGGGGTGGATTAATGGGACCTGATTACAATTA 267 Query 318 CTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAA-AGCACCATGTCTT-CCGAGCCC- 374 || |||||||||||||||||||||||||||||| || |||||| ||| || || || || Sbjct 268 CTTCGAGAGGGGTAATCTCGACATTTTCAGTGG-AAGAGCACCGTGT-TTACCTAGTCCG 325 Query 375 AGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAA 434 | ||||| | ||||| || |||||||| ||||||||||| ||||| |||||||| | ||| Sbjct 326 A-TCTGTGCCTTAAACCTAACCTCTGATGGCTCCGGTGATCACCATGGTTGGTACGCTAA 384 Query 435 CTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTAC-CAAAGCTTT-GAT 492 ||||| || |||||||| || || ||||| ||| |||||||| || || | ||| || Sbjct 385 TTACGTTGAGGTCACGACGGCTGGTGTTCACGCACAGTGCTCG-ACGCAG-GATTTTGA- 441 Query 493 G-TTGAGCAATGGCTTGCGTCC-GATACATCGCCGTATGAGCTCAGTGCTGTTCGGAATA 550 | ||||||||||||| || | | ||||| || || |||||||||| || ||||| || | Sbjct 442 GATTGAGCAATGGCTCGC-TACTGATACTTCTCCTTATGAGCTCACCGCCGTTCGTAACA 500 Query 551 ACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACTC 610 | ||||| || ||||||||| ||||| ||||||||||||||||||||||||| | | Sbjct 501 ATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATCCGGAAAAAGC 560 Query 611 TCTCTTGGATCGT 623 | |||||| |||| Sbjct 561 TTTCTTGGGTCGT 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29087785671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5