BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22190.1 Length=1259 Score E Sequences producing significant alignments: (Bits) Value Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 1906 0.0 Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 806 0.0 > Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 Length=1244 Score = 1906 bits (1032), Expect = 0.0 Identities = 1190/1262 (94%), Gaps = 27/1262 (2%) Strand=Plus/Plus Query 1 ACATTCACTCTCATTTCCATCAAAATTATAACTTCATTTTACA-TTTTGATTAATATCCT 59 ||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 1 ACATTCAGTCTCATTTCCATCAAAATTATAACTTCATTTCA-AGTTTTGATTAATATCCT 59 Query 60 AAAATGGTTAGATTCATCGAAGAAAATATTACTAAAATGTTGGAGACAAAGGCCATCTCA 119 ||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 60 AAAATGGTTAGATTCGTCGAAGAGAATACTACTAAAATGTTGGAGACAAAGGTCATCTCA 119 Query 120 AACTCGGAGGTTTTATATGTCGGAGGAGACGACGGAGACACGTCACCAACGACGAAAGTT 179 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 120 AACTCGGAGGTTTTATATGTCGGAAGAGACGACGGAGACACGTCACCATCGACGAAAGTT 179 Query 180 CTTCATGATTTTCAGATCAA---C--A-GCGGAGGAGGACTGATAAGATCATGGGTTGAT 233 |||||||||||||||||||| | | | |||||||||||||||||||||||||||||| Sbjct 180 CTTCATGATTTTCAGATCAACGGCGGAGGAGGAGGAGGACTGATAAGATCATGGGTTGAT 239 Query 234 TCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 293 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 TCCATGAGAGCTTGTTCTCCTACTCGTCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 299 Query 294 AAGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAAGGAAAA 353 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 300 AAGGAACATCCATCAGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTAAAGGAAAA 359 Query 354 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 419 Query 414 CGAGCTTTCATGTCCAAGAAGATGCGAAATACTGTGAGGAAACTTGCAAAGTGTTTTCCA 473 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 420 CGAGCTTTCATGTCCAAGAAGATGCGAAATACAGTAAGGAAACTTGCAAAGTGTTTTCCA 479 Query 474 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 539 Query 534 TTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGATCTAAATAC 593 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 CTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGACCTAAATAC 599 Query 594 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAATTCCTCCCGGTGATAAAC 653 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 600 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCGACTGAGTTCCTCCCAGTGATCAAC 659 Query 654 GAGGTTTATAAAAAACTAGTCGAGAACACTCAA-TCGATTCCAGGAGCGAAAGTTGAGAA 712 |||||||||||||||||| ||||||| || ||| |||||||||||||| ||||||||||| Sbjct 660 GAGGTTTATAAAAAACTACTCGAGAAAAC-CAAATCGATTCCAGGAGCCAAAGTTGAGAA 718 Query 713 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 778 Query 773 GGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCTCATGCTTACCCAAGGAAG 832 | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 779 GACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAGCTCATGCTTACCCAAGGAAG 838 Query 833 AAAAGTATTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 892 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AAAAGTGTTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 898 Query 893 GTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTTCCTATATATATTGGAGATGA 952 |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 899 GTTAGAATCACTCGGATATAATAATTGTACTGATGTTTTTCCTATATATATTGGAGATGA 958 Query 953 TCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAAAAACAAGGTCTTGGAATTCT 1012 ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 959 TCGTACCGACGAAGATGCCTTTAAGATATTGAGAGATAAAAAACAAGGTCTTGGAATTCT 1018 Query 1013 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1078 Query 1073 TATGGtttttttAGAACGTTTGGTGGAATGGAAACAGTCAAGGTGTGGGGCATGAAGAGT 1132 ||||| ||||||||||||||||||||| |||||||| | ||| ||||||||||||||||| Sbjct 1079 TATGGATTTTTTAGAACGTTTGGTGGACTGGAAACAATTAAGATGTGGGGCATGAAGAGT 1138 Query 1133 TTACAAGTACAGGAGAAACTTGTTCtttttcttttttctttttACTATGTAGTATTGGTA 1192 ||||||||||||||||| | |||||| ||||| |||||| ||| | || | | Sbjct 1139 TTACAAGTACAGGAGAA--T----CTTTTTATTTTT-CTTTTT--TATTT-GT-T----A 1183 Query 1193 AAGATTCTAACGTATAAGAGAACGAGAATAAGTTTATTAA-TATAACAAGAAGACAAATA 1251 | ||||||||||||||||||||||||||| | ||| |||| |||||||| |||||||||| Sbjct 1184 A-GATTCTAACGTATAAGAGAACGAGAATTATTTTGTTAAATATAACAAAAAGACAAATA 1242 Query 1252 TT 1253 || Sbjct 1243 TT 1244 > Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 Length=1050 Score = 806 bits (436), Expect = 0.0 Identities = 791/959 (82%), Gaps = 37/959 (4%) Strand=Plus/Plus Query 173 GAAAGTTCTTCATGATTTTCAG-ATCAACAGCGGAGGAGGACTGAT-AAGATCATGGGTT 230 |||||||||||| ||| || || ||||||| ||||||||| | || || ||||||||| Sbjct 87 GAAAGTTCTTCAAGATCTT-AGTATCAACAATGGAGGAGGATTAATCAA-TTCATGGGTT 144 Query 231 GATTCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAAT--AGCCAATCTTGTT 288 ||||| |||||||||||||||||||||| || ||||| ||| | | | || | | || Sbjct 145 GATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAAT-CTTTGTTGAAACAAAGC-TCTT 202 Query 289 GGATTA-AGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAA 347 || | | | ||||||||||| |||||| | ||||| ||||| || ||||| |||||| Sbjct 203 GGCTCACA-GAACATCCATCAGCTTTGGATATGTTTGAAGAGATTCTTCACCTTTCTGAA 261 Query 348 GGAAAACAAATAGTTATGTTTCTT-GATTATGATGGTACTCTCTCTCCCATTGTTGATGA 406 ||||||||||| |||||| ||||| ||||||||||| ||| | ||||||||||||||||| Sbjct 262 GGAAAACAAATCGTTATG-TTCTTGGATTATGATGGCACTTTATCTCCCATTGTTGATGA 320 Query 407 TCCTGATCGAGCTTTCATGTCCAAGAAGATGCGAA-ATACTGTGAGGAAACTTGCAAAGT 465 ||| ||||||||||||||||| ||||||||| ||| | |||||||||||||| ||||| | Sbjct 321 TCCAGATCGAGCTTTCATGTCTAAGAAGATGAGAAGA-ACTGTGAGGAAACTAGCAAACT 379 Query 466 GTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAAT 525 |||| || || |||||||||||||||||||||||||| ||||||| || |||||||||| Sbjct 380 GTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAAGGTTTATAATTTTGTGAAAC 439 Query 526 TAACTGAGTTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGAT 585 |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 440 TAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACATCAAAGGACCAGAGCAAGGGT 499 Query 586 CTAAA--T-A-CAAG-AA-A---GAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAAT 636 | ||| | | ||| || | || | | | ||||||||||| ||||| || || || | Sbjct 500 CCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCTTTGCCAACCAGCTACAGAGT 559 Query 637 TCCTCCCGGTGATAAACGAGGTTTATAAAAAACTAGTCGAGAAC-ACTCAATCGATTCCA 695 ||||||| |||| ||||||||||||||||| |||| ||| || || ||| | ||| Sbjct 560 TCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGAG-ACAACAAAATTTACTCCC 618 Query 696 GGAGCGAAAGTTGAGAACAACAAATTTTGTG-CGTCTGTTCACTTTCGATGCGTAGAAGA 754 ||||| |||| |||||||| |||||||||| | || |||||||| ||| | || || || Sbjct 619 GGAGCCCAAGTAGAGAACAATAAATTTTGTGTC-TCGGTTCACTTCCGACGTGTCGATGA 677 Query 755 AAATAAATGGAGTGACTTGGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCT 814 |||||| |||||||| ||||| | |||||||||||||| ||||| | ||||| ||||| Sbjct 678 AAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAATGAAGGACTACCCTAAGCT 737 Query 815 -CATGCTTACCCAAGGAAGAAAAGTATT-GGAGATTCGTCCAATCATTAAGTGGGATAAA 872 | | ||||| |||||||||||||| || | || ||||||| || ||||| ||||||||| Sbjct 738 CCGT-CTTACTCAAGGAAGAAAAGTTTTAGAAG-TTCGTCCTATTATTAAATGGGATAAA 795 Query 873 GGCAAAGCACTCGAGTTTTTGTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTT 932 |||||||||||||||||||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 796 GGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAATTGTACCGACGTGTTC 855 Query 933 CCTATATATATTGGAGATGATCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAA 992 ||| | ||||| ||||||||||| || |||||||| || ||||||||| ||||||| || Sbjct 856 CCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAAGATATTGAGAGA-AAG 914 Query 993 AA-ACAAGGTCTTGGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTTCTTATT 1050 || |||||||||||| |||||||| || |||| | |||||||||||| || ||||||| Sbjct 915 AAGACAAGGTCTTGGCATTCTTGTATCTAAATTTC-CAAAGGAGACTAGCGCGTCTTATT 973 Query 1051 CTTTGCAAGAGCCAGATGAGGTTATGGtttttttAG-AACGTTTGGTGGAATGGAAACA 1108 | ||||||| || ||||||||||||| || || | ||||||| |||||||||||||| Sbjct 974 CACTGCAAGAACCCGATGAGGTTATGGAGTTCTT-GCAACGTTTAGTGGAATGGAAACA 1031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47043679578 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5