BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22360.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1 2324 0.0
Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1 1066 0.0
Ahg932197 jgi|Araly1|932197|scaffold_400185.1 361 1e-98
> Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1
Length=1591
Score = 2324 bits (1258), Expect = 0.0
Identities = 1493/1601 (93%), Gaps = 37/1601 (2%)
Strand=Plus/Plus
Query 21 TTCTAGCGAACTCCTTTCATACGTTTTCTCTCTACTCTCATCGCTTTTCTTA--TCTCTC 78
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 1 TTCTAGCGAACTCCTTTCATTCGTTTTCTCTCTA--CTCATCGCTTTTCTTATCTCTCTC 58
Query 79 TCGGAG------C-TCTTCCGTCGTCCACCATTGATTACGGGAG-TGTATTGAGCTAAAT 130
|||||| | |||||||||||| ||||||||||||| | | || | ||| | ||
Sbjct 59 TCGGAGCTCTTCCTTCTTCCGTCGTCTACCATTGATTACGTGTGTTGCAGGGAGGTTAA- 117
Query 131 ATGGCTATAATACAACTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTT 190
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGGCTCTAATACAATTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTT 177
Query 191 GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAATTCCAGT-AG 249
|| || ||||||||||||||||||||| ||||||||| |||||| |||||| ||| | ||
Sbjct 178 GCTGTGAGAGCTTATTATCCCAGCAGACTCGAATCAAGTCGCCAACAAAATCCCA-TGAG 236
Query 250 CCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCACATGGGTCATTGCCCTT 309
|||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 237 CCAAATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTCTCACATGGGTCCTTGCCCTT 296
Query 310 CTTGTCCATGACGGGAATGTCCAGAAATATGCATCCTCCTCGCAGAGGATCTCGCTTCAC 369
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 297 CTTGTCCATGACGGGAATGTCTAGAAATATGCA---TCCTCGCAGAGGATCTCGCTTCAC 353
Query 370 TGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGC 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 354 TGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAAATC 413
Query 430 TGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAAGGA 489
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 TGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCAGATGTGAACAAGGA 473
Query 490 TCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCATATGAGGTTTTATCAGATGA 549
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 474 TCCTGGTGCAGAAGAGAAATTCAAAGAAATAAGTAATGCATACGAGGTTTTATCAGATGA 533
Query 550 TGAAAAGAAATCTCTTTACGATAGGTATGGTGAGGCCGGACTTAAAGGCGCTGCTGG-AT 608
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 534 TGAAAAGAAATCTCTTTACGATAGGTATGGTGAGGCCGGACTAAAAGGCGCTGCTGGAAT 593
Query 609 --TTGGCAAT-GGGGATTTTAGTAATCCGTTCGATCTATTCGACTCATTATTCGAAGGCT 665
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 GGGTGGC-ATGGGGGATTTTAGTAATCCGTTCGATCTATTCGAGTCATTATTCGAAGGCA 652
Query 666 TCGGT-GG-T--G-GGA--T-----GGGTAGAGGTTCAAGAAGCAGAGCTGTGGATGGTC 713
| ||| || | | ||| | |||||||||||||||||||||||| ||||||||||
Sbjct 653 TGGGTGGGATGGGAGGAGGTGGAACGGGTAGAGGTTCAAGAAGCAGAGCCGTGGATGGTC 712
Query 714 AAGACGAGTATTACACGCTAATCTTAAACTTCAAAGAAGCGGTTTTCGGAATGGAGAAAG 773
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 713 AAGACGAGTATTACACACTAATCTTAAACTTCAAAGAAGCGGTTTTCGGGATGGAAAAAG 772
Query 774 AAATAGAGATATCCCGGCTCGAGAGCTGTGGGACATGTGAAGGTTCAGGTGCAAAACCTG 833
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 773 AAATAGAGATATCACGGCTCGAGAGCTGCGGGACTTGTGAAGGTTCAGGTGCAAAACCGG 832
Query 834 GAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGCCAAGTGGTTTCAGCAGCTA 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 833 GAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGTCAAGTGGTTTCATCAGCAA 892
Query 894 GAACTCCTCTGGGCGTGTTCCAACAAGTCATGACTTGCTCGTCCTGTAATGGCACTGGAG 953
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 893 GAACTCCTCTCGGCGTGTTCCAACAAGTCATGACTTGCTCATCCTGTAACGGCACTGGAG 952
Query 954 AGATCTCGACGCCGTGTGGTACTTGCTCTGGAGACGGACGCGTGAGGAAGACAAAACGGA 1013
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 953 AGATCTCGACGCCGTGTGGTACTTGTTCAGGAGACGGACGCGTGAGGAAGACAAAACGGA 1012
Query 1014 TAAGTCTCAAAGTACCAGCCGGGGTTGATTCAGGTAGCCGGTTGAGAGTGAGAGGAGAAG 1073
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1013 TAAGTCTCAAAGTACCAGCTGGGGTTGATTCAGGTAGCCGGTTAAGAGTAAGAGGAGAAG 1072
Query 1074 GCAATGCCGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTTGTTATAGAAGTTATCC 1133
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1073 GCAATGCAGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTTGTTATAGAAGTTATAC 1132
Query 1134 CAGACCCGATTTTGAAACGAGACGATACAAATATTCTCTACACTTGCAAGATATCGTATA 1193
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CAGACCCGGTTTTGAAACGGGACGATACAAATATTCTCTACACTTGCAAGATATCGTATA 1192
Query 1194 TCGATGCGATTTTAGGGACGACACTGAAAGTACCAACAGTGGATGGGACAGTAGATTTGA 1253
| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1193 TTGATGCGATTTTAGGGACAACATTGAAAGTGCCAACAGTGGATGGGACAGTAGATTTGA 1252
Query 1254 AAGTTCCAGCTGGGACACAACCTAGCACGACGCTTGTGATGGCGAAAAAAGGAGTTCCGG 1313
|||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1253 AAGTGCCAGCAGGGACACAACCTGGCACGACGCTTGTGATGGCGAAAAAGGGAGTTCCGG 1312
Query 1314 TATTGAACAAGAGTAATATGAGAGGAGATCAGTTGGTGAGAGTACAAGTGGAGATACCTA 1373
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1313 TATTGAACAAGAGTAATATGAGAGGGGATCAGTTGGTGAGAGTACAAGTGGAGATACCTA 1372
Query 1374 AGAGATTGAGCAAAGAGGAGAAAAAACTTATTGAAGAGCTTGCTGATATGAGCAAGAACA 1433
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGAGATTGAGCAAAGAGGAGAAGAAACTTATTGAAGAGCTTGCTGATATGAGCAAGAACA 1432
Query 1434 AGACTGCTAATAGCACCAGTAGATGATTAGAAACACGAAAATTTTGACATTGAAATTATG 1493
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1433 AGACTGCTAATAGCACCAGTAGATGATTAGAAACATGAAAATTTTGACATTGAAAATGTG 1492
Query 1494 AATCTCTCTATACATATACATTTTTCTACTCTGGCTTGTGATATTTAGAATGGCTCTTGA 1553
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1493 AATCTAT--ATACACATACATTTTTCTACCCTGGCTTGTGATATTTAGAATGGCTCTTGA 1550
Query 1554 AAAAAGAAGAAGCAAGTGGAGGAAGATGATTATTGTTGTGG 1594
||||||||||||||||||||||||||||||| |||||||||
Sbjct 1551 AAAAAGAAGAAGCAAGTGGAGGAAGATGATTGTTGTTGTGG 1591
> Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1
Length=1668
Score = 1066 bits (577), Expect = 0.0
Identities = 1158/1428 (81%), Gaps = 81/1428 (6%)
Strand=Plus/Plus
Query 65 TTTTCTTATCTCTCTCGGAGCTCTTCCGTCGTCCACCATT-GATTACGGGAGTGTATTGA 123
||||||||||| || | | |||| ||||||| ||||||| ||||||||||||||| ||
Sbjct 20 TTTTCTTATCTATCGCAAAACTCTCCCGTCGT-CACCATTCGATTACGGGAGTGTAATG- 77
Query 124 GCTAAATATGGCTATAATACAACTT-GGAAGTACATGTGTTGCTCAAT---GGAGTATTC 179
|| | || | |||||| || |||||| ||||||||||||||| ||| | |||
Sbjct 78 GC------T--CT-T-ATACAA-TTCGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTC 126
Query 180 GTCCTCAATTTGCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAA 239
||||||| ||||| || | ||||| |||||| |||||| | || | ||| ||| | |
Sbjct 127 GTCCTCACTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGT---CTCACCAAGACA 183
Query 240 ATTCCAGT-AGCCAAG-TAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCT-CACATG 296
||| || | |||| || ||||||||||||||||||||| |||||||||||| | |||| |
Sbjct 184 ATTGCA-TCAGCC-AGATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTT-TGCACA-G 239
Query 297 GG-TCATTGCCCTTCTTGTCCA-TGACGGGAATGTC-CAGAAATATGCATCCTCCTCGCA 353
|| || || |||||||||| || |||||||| | || | | |||| || | | |||| |
Sbjct 240 GGCTCTTTACCCTTCTTGT-CATTGACGGGAGTATCTC-GTAATA--CA-CATTCTCGTA 294
Query 354 GAGGATCTCGCTTCACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGA 413
||||| ||||||||||||||||||| ||||| |||| |||||| || || ||||| || |
Sbjct 295 GAGGAGCTCGCTTCACTGTTAGAGCCGATGCTGATTTCTATTCTGTCCTTGGAGTCTCTA 354
Query 414 AAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATC 473
|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 355 AAAATGCAACCAAAGCTGAGATTAAAAGTGCTTATCGGAAGCTCGCTAGGAGTTACCATC 414
Query 474 CGGATGTGAACAAGGATCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCATATG 533
|||| |||||||||||| |||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 415 CGGACGTGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATG 474
Query 534 AGGTTTTATCAGATGATGAAAAGAA-ATCTCTTTACGATAGGTATGGTGAGGCCGGACTT 592
|| | |||||||||||||| || || |||||| ||||| || ||||| ||||| ||| ||
Sbjct 475 AGATCTTATCAGATGATGAGAA-AAGATCTCTGTACGACAGATATGGCGAGGCAGGAGTT 533
Query 593 AAAGGCGCTGCTGGATTTG-G-CAATGGGG-ATTTTAGTAATCCGTTCGATCTATTCGAC 649
|||||||||| | || | | || ||||| ||| ||||||||| || |||||||| ||
Sbjct 534 AAAGGCGCTG--GAATGGGAGGCA-TGGGGGATTATAGTAATCCATTTGATCTATTTGAG 590
Query 650 TCATTATTCGAAGGC-T---TCGG-TGG------TGGGA--TGG---G--TAG-AG-G-T 688
|||||||||||||| | | || ||| ||||| ||| | ||| || | |
Sbjct 591 TCATTATTCGAAGGAATGGGTGGGATGGGAGGAATGGGAGGTGGAATGGGTAGTAGAGGT 650
Query 689 TCAAGAAGCAGAGCTGTGGATGGTCAAGACGAGTATTACACGCTAATCTTAAACTTCAAA 748
||||| ||||||||| | |||||| |||| ||||||||| | |||||||| || ||||||
Sbjct 651 TCAAGGAGCAGAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAA 710
Query 749 GAAGCGGTTTTCGGAATGGAGAAAGAAATAGAGATATCCCGGCTCGAGAGCTGTGGGACA 808
|||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||
Sbjct 711 GAAGCGGTTTTCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACT 770
Query 809 TGTGAA-GGTTCAGGTGCAAAACCTGGAACCAAACCGACCAAATGCACCACGTGTGGCGG 867
|| || ||||| || ||||| | ||||||||||| |||||||||| |||||||||||
Sbjct 771 TGC-AATGGTTCTGGAGCAAAGGCGGGAACCAAACCAACCAAATGCAAAACGTGTGGCGG 829
Query 868 ACAAGGCCAAGTGGTTTCAGC-AGCTAGAACTCCTCTGGGCGTGTTCCAACAAGTCATGA 926
||||| || ||||| || | | | || || || || || || ||||||||||||||||
Sbjct 830 GCAAGGACAGGTGGTGGCATCGA-CGAGGACACCACTCGGTGTATTCCAACAAGTCATGA 888
Query 927 CTTGCTCGTCC-TGTAATGGCACTGGAGAGATCTCGACGCCGTGTGGTACTTGCTCTGGA 985
||||||| ||| || || || ||||||||||| || | || |||||| | || || |||
Sbjct 889 CTTGCTC-TCCATGCAACGGAACTGGAGAGATATCAAAACCATGTGGTGCATGTTCAGGA 947
Query 986 GACGGACGCGTGAGGAAG-ACAAAACGGATAAGTCTCAAAGTACCAGCCGGG-GTTGATT 1043
|| ||||| ||||| ||| ||||| ||||| ||||| ||||| || || ||| || ||||
Sbjct 948 GATGGACGTGTGAG-AAGGACAAAGCGGATTAGTCTTAAAGTTCCTGC-GGGTGTGGATT 1005
Query 1044 CAGGTAGCCGGTTGAGAGTGAGAGGAGAAGGCAATGCCGGGAAGAGAGGCGGATCACCAG 1103
| || || |||| ||||| || |||||||| ||||| || |||||||| |||||||| |
Sbjct 1006 CTGGAAGTAGGTTAAGAGTAAGGGGAGAAGGAAATGCAGGAAAGAGAGGTGGATCACCGG 1065
Query 1104 GCGATCTGTTTGTTGTTATAGAAGTTATCCCAGACCCGATTTTGAAACGAGACGATACAA 1163
| ||||| |||| ||||| || ||||| || || ||||||||||| || || |||||||
Sbjct 1066 GAGATCTCTTTGCGGTTATTGAGGTTATTCCGGATCCGATTTTGAAGCGTGATGATACAA 1125
Query 1164 ATATTCTCTACACTTGCAAGATATCGTATATCGATGCGATTTTAGGGACGACACTGAAAG 1223
|||| || || || || |||||||||||| | ||||| || ||||||||||| ||||| |
Sbjct 1126 ATATACTTTATACGTGTAAGATATCGTATGTAGATGCCATATTAGGGACGACTCTGAAGG 1185
Query 1224 TACCAACAGTGGATGGGACAG-TAGATTTGAAAGTTCCAGCTGGGACACAACCTAGCACG 1282
| |||||||||||||| | || | ||||||||||| ||||| ||||||||||| ||||||
Sbjct 1186 TTCCAACAGTGGATGG-AGAGGTGGATTTGAAAGTACCAGCAGGGACACAACCGAGCACG 1244
Query 1283 ACGCTTG-TGATGGCGAAAAAAGGAGTTCCGGTATTGAACAAGAGTAATATGAGAGGAGA 1341
|| ||| | ||||||| ||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 1245 ACA-TTGGTAATGGCGAGAAAAGGAGTTCCGGTTTTGAATAAGAGTAAGATGAGAGGTGA 1303
Query 1342 TCAGTTGGTGAGAGTACAAGTGGAGATACCTAAGAGATTGAGCAAAGAGGAGAAAAAACT 1401
|| || |||||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1304 CCAATTAGTGAGAGTGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGAAGCT 1363
Query 1402 TATTGAAGAGCTTGCTGATATGAGCAAGAACAAGACT-GCTAATAGCA 1448
| |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1364 TGTTGAGGAGCTTGCTGATATGAGCAAGAACAAGG-TAGCTAATAGCA 1410
> Ahg932197 jgi|Araly1|932197|scaffold_400185.1
Length=838
Score = 361 bits (195), Expect = 1e-98
Identities = 385/472 (82%), Gaps = 32/472 (7%)
Strand=Plus/Plus
Query 114 AGTGTATTGAGCTAAATATGGCTATAATACAACTTGGAAGTACATGTGTTGCTCAATGGA 173
|||||||| ||||||||||| || |||||||| |||||||||| || ||||||||||||
Sbjct 4 AGTGTATTCAGCTAAATATGTCTCTAATACAATTTGGAAGTACTTGCATTGCTCAATGGA 63
Query 174 GTATTCGTCCTCAATTTGCAGTCAGAGCT-TATTATCCCAGCAGAATCGA-ATCAACTCG 231
||| || | || | ||| || ||| | || ||| | || ||||| |||
Sbjct 64 GTA------CT--A-TT-C-GTC----CTCCATT-T-GCACCAG--T-GAGATCAAGTCG 103
Query 232 CCATCAAAATTCCAGT-AGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCT 290
||| | |||||||| | | |||| |||| |||||||| ||||||||||||||||||||||
Sbjct 104 CCAACTAAATTCCA-TGATCCAAATAAACTGTTTGGGTGCTTCAAAGTCGAGTATGTTCT 162
Query 291 CACATGGGTCATTGCCCTTCTTGTCCATGACGGGAATGTCCAGAAATATGCATCC-TCCT 349
||||||| || ||||| |||||||| ||| ||||| ||| ||||||| || | | |
Sbjct 163 CACATGGATCCTTGCCTTTCTTGTCAATGCCGGGAGTGTTAAGAAATAGGCG-CAAT--T 219
Query 350 CGCAGAGGATCTCGCTTCACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTT 409
| |||||||||||||||| ||||| ||||||||||| |||||||| || |||||||||
Sbjct 220 -GTAGAGGATCTCGCTTCATTGTTAAAGCTGATGCAGTTTACTATTTAGTCCTCGGAGTT 278
Query 410 TCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTAC 469
|||||||| |||||| | |||||||||||| |||||||||||| |||||| || ||||
Sbjct 279 TCGAAAAACGCAACCTTATCTGAGATTAAAACCGCTTATCGGAAACTGGCTTTGAGTTAC 338
Query 470 CATCCGGATGTGAACAAGGATCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCA 529
|||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| |||
Sbjct 339 CATCCGGATGTGAACAAGAATCCTGATGCAGAAGAGAGATTCATAGAAATAAGTAATGCA 398
Query 530 TATGAGGTTTTATCAGATGATGAAAAGAAATCTCTTTACGATAGGTATGGTG 581
|||||||| |||||||| || || |||||||| |||||||| ||||||||
Sbjct 399 TATGAGGTCTTATCAGAAGA-GAT--GAAATCTCATTACGATAAGTATGGTG 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5