BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22420.1 Length=1163 Score E Sequences producing significant alignments: (Bits) Value Ahg481103 jgi|Araly1|481103|fgenesh2_kg.4__163__AT2G22420.1 1808 0.0 > Ahg481103 jgi|Araly1|481103|fgenesh2_kg.4__163__AT2G22420.1 Length=1128 Score = 1808 bits (979), Expect = 0.0 Identities = 1066/1107 (96%), Gaps = 9/1107 (1%) Strand=Plus/Plus Query 14 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTA-TAACCCAACAAACAAAGT 72 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTATTAA-CCAACAAACAAAGT 59 Query 73 CTCTACTTCTTCTTCAATCACTGAAACACAACACC----aa-aaaagaaaaaaGTATGTC 127 |||| |||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 60 CTCTTCTTCTTCTTCAATCACTGAAACACAACACCAAAAAAGAAAAGAAAAAAGTATGTC 119 Query 128 TCTTCTTCCCCATCTCATCCTCTACCTAACACTTTTGACGGTGGTTGTTACTGGAGAAAC 187 ||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||| Sbjct 120 TCTTCTTCCCCATCTCATCCTCTACCTAACACTCTTCACGGTGGCTGTTACCGGAGAAAC 179 Query 188 TCTCCGACCAAGATTCTACAGCGAGACATGCCCTGAAGCTGAATCCATAGTAAGAAGAGA 247 |||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||| Sbjct 180 TCTCCGGCCAAGATTCTACAGAGAAACATGCCCTGAAGCTGAATCCATAGTAAGAAAAGA 239 Query 248 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 299 Query 308 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 359 Query 368 GCTTGGTGAAAAACTATCACTTTCCAACATCGATTCACTAAGATCTTTCGAAGTCGTTGA 427 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 360 GCTTGGTGAGAAACTATCACTTTCCAACATCGATTCTTTAAGATCTTTCGAAGTCGTTGA 419 Query 428 CGACATTAAAGAAGCTCTAGAGAAAGCTTGTCCAGCTACTGTTTCTTGTGCCGATATCGT 487 |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 CGACATCAAAGAAGCTTTAGAGAAAGCTTGTCCTGCTACTGTTTCTTGTGCCGATATCGT 479 Query 488 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 539 Query 548 AGGGAGGAAAGACAGTTTAACAGCGAGTCAGCAAGATTCCGACGATATAATGCCAAGTCC 607 ||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 540 AGGAAGGAGAGACAGTTTAACAGCGAGTCAAAAAGATTCCGACGATGTAATGCCAAGTCC 599 Query 608 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTAAAAGA 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTGAAAGA 659 Query 668 CATGGTTGCTTTATCAGGGTCACACTCAATAGGTCAAGGTCGGTGTTTTTCAATCATGTT 727 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 660 CATGGTGGCTTTATCAGGGTCACACTCAATTGGTCAAGGTCGGTGTTTTTCAATCATGTT 719 Query 728 CAGACTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTTGAACCGAGTTACCG 787 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 720 TAGGCTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTCGAACCGAGTTACCG 779 Query 788 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 839 Query 848 TGCAACACCTCAGGTTTTTGATAATCAGTA-TTTCAAAGACTTGGTTTCAGGGAGAGGGT 906 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 840 TGCAACACCTCAGGTTTTTGATAATCAGTACTTT-AAAGACTTGGTTTCAGGGAGAGGGT 898 Query 907 TTCTTAACTCTGATCAGACTTTGTACACGAATCTAGTGACGAGAGAGTATGTGAAGATGT 966 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 899 TTCTTAACTCTGATCAGACTTTGTACACGAATCGAGTGACGAGAGAGTATGTGAAGATGT 958 Query 967 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGCAGAAGGCATGGTGAAGTTGGGTG 1026 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 959 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGAAGAAGGGATGGTGAAGTTGGGTG 1018 Query 1027 ATTTGCAATCTGGGAGACCTGGTGAGATTAGGTTTAATTGTAGAGTTGTTAATAGAAGGC 1086 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1019 ATTTGCAATCTGGAAGACCTGGTGAGATTAGGTTTAATTGTAGGGTTGTTAATAGAAGGC 1078 Query 1087 CTATTGATGTATTGCTTGTATCTTGAA 1113 |||||||||||||||||| |||||||| Sbjct 1079 CTATTGATGTATTGCTTGAATCTTGAA 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43383879546 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5