BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22430.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481105 jgi|Araly1|481105|fgenesh2_kg.4__165__AT2G22430.1 1820 0.0
Ahg497511 jgi|Araly1|497511|fgenesh2_kg.666__2__AT5G65310.1 137 2e-31
Ahg496765 jgi|Araly1|496765|fgenesh2_kg.8__2581__AT5G65310.1 137 2e-31
> Ahg481105 jgi|Araly1|481105|fgenesh2_kg.4__165__AT2G22430.1
Length=1437
Score = 1820 bits (985), Expect = 0.0
Identities = 1219/1324 (92%), Gaps = 47/1324 (4%)
Strand=Plus/Plus
Query 201 AGTAATTAAAGATTGTTGATGATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 147 AGTAATTAAAGATTGTTGATAATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 206
Query 261 ATCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGGAGATACGGTGGGAGA 320
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 207 AGCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGAAGATACGGTGGGAGA 266
Query 321 GAGTTTCAGTCGATGCTTGAAGGATACGAGgaagaagaagaagctatagtagaagaaaga 380
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 267 GAGTTTCAGTCGATGCTTGAAGGTTACGAGGAAGAAGAAGAAGCTATAGTTGAAGAAAGA 326
Query 381 ggacacgtgggcttgtcggagaagaagagaagGTTAAGCATTAACCAAGTTAAAGCTTTG 440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GGACACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTG 386
Query 441 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446
Query 501 GAACTTGGTCTTCAACCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTCGGTGG 560
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506
Query 561 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTACGATTCTCTCCGT 620
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566
Query 621 CATAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 680
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CACAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 626
Query 681 AAAACGAAGCTTAATGGAGGAGGAGGagaagaagaagaagaagagaaCAACGCGGCGGTG 740
||||| |||||||| |||||||||| | | ||||||||||| || | ||||||||||| |
Sbjct 627 AAAACTAAGCTTAACGGAGGAGGAG-A-A-GAAGAAGAAGA-GA-A-CAACGCGGCGGCG 680
Query 741 ACAAC---GGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCGGAGAAGATT 797
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 681 ACAACAACGGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCAGAGAAGATC 740
Query 798 ACAGAGGCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCTGATGGTCTTAATTACCGG 857
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 741 ACAGAACCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCCGATGGTCTTAATTACCGG 800
Query 858 AGTTTCACAGATCTACGTGATCTTCTTCCATTAAAGGCGGCGGCTTCTTCATTCGCCGCC 917
|||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 801 AGTTTCACTGATCTACGTGACCTTCTTCCATTAAAAGCGGCGGCTTCTTCTTTCGCCGCC 860
Query 918 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTGCTGAATGAAGAAAGCAGCTCT 977
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 861 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTTCTGAACGAGGAAAGCAGCTCT 920
Query 978 AATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAA 1037
|| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 921 AACGTCACTGTGGCGGCTCCGGTGACGGTCCCCGGCGGCAATTTCTTCCAGTTTGTGAAA 980
Query 1038 ATGGAGCAGACGGAGGATCATGAGGACTTTCTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1097
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 981 ATGGAGCAGACGGAGGATCACGAGGACTTTTTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1040
Query 1098 TCCGATGAACAACCGCCGTCTCTACACTGGTACTCCACCGTTGATCATTGGAATTGAAGC 1157
|||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 1041 TCCGATAAACAACCGCCGTCTCTACACTGGTACTCCACCGTCGATCACTGGACTTGAAGC 1100
Query 1158 TGAAAACACCACCGGAAGAGATTTTGGATTGGATTAGATGCT-CTT-T-T-CTTCTCTGT 1213
|| ||||||||| ||||||||||||||||| || | || ||| | | |||||||||
Sbjct 1101 TGTAAACACCACTGGAAGAGATTTTGGATTATATGCTCT-CTTCTTCTCTGCTTCTCTGT 1159
Query 1214 GGAAAAAACAGAGGAGGGCAAAATGGGAATAAAG-TTAAAATTGAAGGGTGAAAGGGCAA 1272
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||
Sbjct 1160 GGAAAAAACAGAGGAGGGCACAATGGGAATAATGGTTAAAATTGAAGGGTGAAAGGGAAA 1219
Query 1273 --TTAAGGAAGGGTTAAGTCTGGGCGGGAATAATGATTT-AGGGTGAATTTGTAATTATG 1329
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1220 AATTAAGGAAGGGTTAAATCTGGGCGGGAATAATGATTTTAGGGTGAATTTGTAATTATG 1279
Query 1330 CTTTTTCTCTAGTGATTTTCGTGCACTTCTTGTAATTAAGGATCATCAGATCAAAGAGAA 1389
||||| |||| ||| ||| ||||||||||||||||||||| |||| | | |||||
Sbjct 1280 CTTTT-CTCTGGTGGTTT-CGTGCACTTCTTGTAATTAAG-ATCA--A-A-----GAGAA 1328
Query 1390 ATTGAGAAGGGGTTAACATGTCAAAGGCAAAAATTCAGCATGGGCTCTTTAAATTACAAT 1449
||||||||||| || | ||| | |||||||||| ||||||||||||||||
Sbjct 1329 ATTGAGAAGGG---AA-A----AAA---A----TTCAGCATGGACTCTTTAAATTACAAT 1373
Query 1450 --T-GACCCTTGAAACCTAAATTATACCACTTCTGACCCTTAAATCAATTTTTGAATCAT 1506
| ||||||| ||| |||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 1374 AGTCGACCCTTAAAAACTAAATTATACCACTTTTAACCCTTAAATAAATTTTTGAATCAT 1433
Query 1507 AAAA 1510
||||
Sbjct 1434 AAAA 1437
> Ahg497511 jgi|Araly1|497511|fgenesh2_kg.666__2__AT5G65310.1
Length=1515
Score = 137 bits (74), Expect = 2e-31
Identities = 145/178 (81%), Gaps = 10/178 (6%)
Strand=Plus/Plus
Query 426 CAAGTTAAAGCTTTGGAGAAGAATTTTGAG-TTAGAGAATAAGCTT-GAGCCTGAGAGGA 483
||||| ||||| || ||||||||||||||| || || || ||| || ||||| || ||||
Sbjct 590 CAAGTGAAAGCGTTAGAGAAGAATTTTGAGATT-GATAACAAG-TTAGAGCCAGAAAGGA 647
Query 484 AAGTTAAGTTAGCTCAAGAACTT-GGTCTTCAACCTCGTCAAGTTGCTG-TTTGGTTTCA 541
|||| ||| | || ||||| ||| ||| | || || |||||||| || | | ||||||||
Sbjct 648 AAGTGAAGCTGGCCCAAGAGCTTGGGT-TGCAGCCGCGTCAAGTGGC-GATCTGGTTTCA 705
Query 542 AAACCGTCGTGCTCGGTGGAAGACAAAACAGCTTGAGAAA-GATTACGGTGTTCTTAA 598
||||| ||||||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct 706 GAACCGCCGTGCTCGGTGGAAGACAAAACAGCTTGA-ACGTGATTATGGCGTTCTTAA 762
> Ahg496765 jgi|Araly1|496765|fgenesh2_kg.8__2581__AT5G65310.1
Length=1519
Score = 137 bits (74), Expect = 2e-31
Identities = 145/178 (81%), Gaps = 10/178 (6%)
Strand=Plus/Plus
Query 426 CAAGTTAAAGCTTTGGAGAAGAATTTTGAG-TTAGAGAATAAGCTT-GAGCCTGAGAGGA 483
||||| ||||| || ||||||||||||||| || || || ||| || ||||| || ||||
Sbjct 594 CAAGTGAAAGCGTTAGAGAAGAATTTTGAGATT-GATAACAAG-TTAGAGCCAGAAAGGA 651
Query 484 AAGTTAAGTTAGCTCAAGAACTT-GGTCTTCAACCTCGTCAAGTTGCTG-TTTGGTTTCA 541
|||| ||| | || ||||| ||| ||| | || || |||||||| || | | ||||||||
Sbjct 652 AAGTGAAGCTGGCCCAAGAGCTTGGGT-TGCAGCCGCGTCAAGTGGC-GATCTGGTTTCA 709
Query 542 AAACCGTCGTGCTCGGTGGAAGACAAAACAGCTTGAGAAA-GATTACGGTGTTCTTAA 598
||||| ||||||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct 710 GAACCGCCGTGCTCGGTGGAAGACAAAACAGCTTGA-ACGTGATTATGGCGTTCTTAA 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5