BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22540.1 Length=1556 Score E Sequences producing significant alignments: (Bits) Value Ahg481114 jgi|Araly1|481114|fgenesh2_kg.4__174__AT2G22540.1 1325 0.0 > Ahg481114 jgi|Araly1|481114|fgenesh2_kg.4__174__AT2G22540.1 Length=1194 Score = 1325 bits (717), Expect = 0.0 Identities = 793/829 (96%), Gaps = 8/829 (1%) Strand=Plus/Plus Query 497 AAACCTAAGCTCTCTCTCTTGCTTCTAGGGtttttttGTTCGTTGTGATGGCGAGAGAAA 556 ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||| Sbjct 370 AAACCTAAGCTCTCT-TCTTGCTTCTAGGG-GTTTTTCTT-GTTGTGATGGCGAGAGAAA 426 Query 557 AGATTCAGATCAGGAAGATCGACAACGCAACGGCGAGACAAGTGACGTTTTCGAAACGAA 616 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 427 AGATTCAGATCAGAAAGATCGACAACGCGACGGCGAGACAAGTGACGTTTTCGAAACGAA 486 Query 617 GAAGAGGGCTTTTCAAGAAAGCTGAAGAACTCTCCGTTCTCTGCGACGCCGATGTCGCTC 676 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 487 GAAGAGGGCTTTTCAAGAAAGCTGAAGAGCTCTCCGTTCTCTGCGACGCCGATGTTGCTC 546 Query 677 TCATCATCTTCTCTTCCACCGGAAAACTGTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 736 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 547 TCATCATCTTCTCTTCCACCGGAAAACTCTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 606 Query 737 TCCTAGAGAGGCATAACTTGCAGTCAAAGAACTTGGAGAAGCTTGATCAGCCATCTCTTG 796 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 607 TCCTAGAGAGGCATAACTTGCAGTCAAAGAATTTGGAGAAGCTTGATCAGCCATCTCTTG 666 Query 797 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 726 Query 857 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTTC 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 727 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTGC 786 Query 917 AGCAGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGACA 976 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 787 AACGGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGGCA 846 Query 977 AGATTATGAGTGAGATCAGCGAACTTCAGAAAAAGGGAATGCAATTGATGGATGAGAACA 1036 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 847 AGATTATGAATGAGATCAGCGAACTTCAGAGAAAGGGAATGCAATTGATGGATGAGAACA 906 Query 1037 AGCGGTTGAGGCAGCAAGGAACGCAACTAACGGAAGAGAACGAGCGACTTGGCATGCAAA 1096 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 907 AGCGGTTGAGGCAGCAAGGAACGCAACTATCGGAAGAGAACGAGCGACTTGGCATGCAAA 966 Query 1097 TATGTAACAATGTGCATGCACACGGTGGT---GCTGAATCGGAGAACGCTGCTGTGTACG 1153 |||| || |||||||||| | |||||||| |||||||| |||||||| |||||||||| Sbjct 967 TATGGAATAATGTGCATGAATACGGTGGTACCGCTGAATCTGAGAACGCCGCTGTGTACG 1026 Query 1154 AGGAAGGACAGTCGTCGGAGTCTATTACTAACGCCGGAAACTCTACCGGAGCGCCTGTTG 1213 |||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 1027 AGGAAGGACACTCGTCGGAGTCTATTACTAACGCTGGAAACTCCACCGGAGCACCTGTTG 1086 Query 1214 ACTCCGAGAGCTCCGACACTTCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGA 1273 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1087 ACTCCGAGAGCTCCGATACATCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGG 1146 Query 1274 ACAATTCAAAGAAGTTGATGGA-GTGAGGAGAGTAATGTAAATCTTTTT 1321 |||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1147 ACAATTCAAAGAAGTTGATGGACG-GAGGAGAGTAATGTAAATCTTTTT 1194 Score = 307 bits (166), Expect = 1e-82 Identities = 201/216 (93%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 199 TTCTTTCTTTCAAATCTTTCAAAAACTAGGGTTTTTACTGTCTTGAAATCATATTTATTC 258 |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 128 TTCTTTCTTTCAAATCCTTCAAAAACTAGGGTTTTTACTGTCTTCAAACCATATTTATTC 187 Query 259 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCActctct 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCACTCTCT 247 Query 319 ctctcttctttaaagtctccctttttagcaaaaa-ttctctctctcacaaaatttatttc 377 |||| | ||||||||||||||||||||||||||| |||||||||||||||| ||| | | Sbjct 248 CTCT-T-CTTTAAAGTCTCCCTTTTTAGCAAAAAATTCTCTCTCTCACAAA-TTT-T--C 301 Query 378 ctctggcttcttcttcctcctcctccatctc-ttct 412 |||||| ||||||||||||||| || |||| |||| Sbjct 302 CTCTGGGTTCTTCTTCCTCCTCATC--TCTCATTCT 335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58278074850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5