BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22730.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320107 jgi|Araly1|320107|fgenesh1_pm.C_scaffold_4000164 2307 0.0
> Ahg320107 jgi|Araly1|320107|fgenesh1_pm.C_scaffold_4000164
Length=1521
Score = 2307 bits (1249), Expect = 0.0
Identities = 1374/1434 (96%), Gaps = 10/1434 (1%)
Strand=Plus/Plus
Query 2 TGGTGACCAAAGAAGAAGATTGCCTTCCTCCTGTAACGGAGACCACGTCGAGATGTTATT 61
|||| ||||||||||||||||| |||||||||| |||||| ||| ||||||||||||
Sbjct 5 TGGTCACCAAAGAAGAAGATTGTCTTCCTCCTGCGACGGAG---ACGCCGAGATGTTATT 61
Query 62 CTACTTCTTCTTCTACTCCCCTTGCGGAGTTAGAGACTGTCCGAAGCTTAGAAATCGTCG 121
|| |||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 62 CTCCTTCATCTACTACTCCTCTTGCGGAGTTAGAGACTGTTCGAAGCATAGAAATCGTCG 121
Query 122 AATCTTCTTCCTCTCTCTCTCCCGTTTGGTTACTGGTGATCTTTTGTATCATTAACTTGT 181
|| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 122 AA---TCTTCCTTTCTCTCTCCCGTTTGGTTACTAGTGATCTTTTGCATCATTAACTTGT 178
Query 182 TAAACTACATGGATCGTGGTGCGATAGCGAGCAATGGTGTCAATGGCAGTACCAGGAGTT 241
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 179 TAAACTACATGGATCGTGGTGCGATAGCGAGCAACGGTGTCAATGGAAGTACCAGGAGTT 238
Query 242 GTAATGATAAGGGCAAATGCACTCTTGCAACTGGAATTCAGGGACATTTTAACCTAAGTA 301
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTAATGATAAAGGCAAATGCACTCTTGCAACTGGAATTCAGGGACATTTTAACCTAAGTA 298
Query 302 ATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAA 358
Query 362 TCTTTGCTTCATTGGCAAAAAGACTTATTGGAGTAGGTTTAACTGTTTGGACTATTGCAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTTTGCTTCATTGGCAAAAAGACTTATTGGAGTAGGTTTAACTGTTTGGACTATTGCAG 418
Query 422 TTCTTGGCTGTGGCAGTTCCTTTGCCTTTTGGTTTATCGTCTTATGTCGTATGTTCGTTG 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTTGGTTGTGGCAGTTCCTTTGCCTTTTGGTTTATCGTCTTATGTCGTATGTTCGTTG 478
Query 482 GTGTAGGTGAAGCTTCTTTCATTAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGTAGGTGAAGCTTCTTTCATTAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTC 538
Query 542 AAGAACAGAAAGCTGCATGGCTTGGACTGTTTTACATGTGTATACCAAGTGGTGTTGCTC 601
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAAACAGAAAGCTGCATGGCTTGGACTGTTTTACATGTGTATACCAAGTGGTGTTGCTC 598
Query 602 TTGGTTATGTCTATGGCGGATACGTAGGAAAACATTTTAGTTGGCGGTATGCGTTTTGGG 661
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 599 TTGGTTATGTCTATGGCGGATATGTCGGAAAACATTTTAGTTGGCGCTATGCGTTTTGGG 658
Query 662 GTGAAGCTGTTTTAATGGCTCCATTTGCTGTTCTTGGTTTTTTAATGAAACCTTTACAGT 721
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 659 GTGAAGCTGTTTTAATGGCTCCATTTGCTGTCCTTGGTTTTTTAATGAAACCTTTGCAGT 718
Query 722 TAAAAGGATCAGAGACATTGAAAAACAACAATCGTCTTCAGGTTGATAATGAGATTGAGC 781
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 TAAAAGGCTCAGAGACATCGAAAAACAACAATCGTCTTCAGGTTGGTAATGAGATTGAGC 778
Query 782 ATGAC-CAGTTTGAGGTCTCAATTGAAACTAGCAAGTCAAGTTATGCGAACGCGGTTTTC 840
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 ATG-CTCAGTTTGAGGTCTCAATTGAAACTAGCAAGTCAAGTTACGCGAACGCGGTTTT- 836
Query 841 AAAT-CATTTACTGGCTTTGCAAAAGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGT 899
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAATTCATTTACTGGATTTGCAAAAGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGT 896
Query 900 TGTTAATGTCTTAGGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGTTAATGTCTTAGGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGG 956
Query 960 ACCAAAGGCTGGTTATAACATTTATAAAATGAAAAACGCAGATATGATCTTTGGGGCAGT 1019
||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 957 ACCAAAGGCGGGTTATAATATTTATAAGATGAAAAACGCGGATATGATCTTCGGGGCAGT 1016
Query 1020 AACTATCATTTGTGGGATCGTTGGAACATTATCAGGAGGCTTTATACTTGATCGTGTTAC 1079
||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 1017 AACTATCATTTGTGGGATCGTTGGAACATTATCAGGAGGCTTTTTACTTGATCGCGTCAC 1076
Query 1080 TGCTACAATTCCAAATGCTTTTAAGCTCTTATCCGGAGCAACATTTCTCGGGGCGGTATT 1139
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 TGCGACAATTCCAAATGCTTTTAAGCTCTTATCCGGAGCAACATTTCTCGAGGCGGTATT 1136
Query 1140 TTGCTTCACTGCATTTACCCTGAAGAGTTTATACGGTTTCATCGCTCTCTTTGCTTTAGG 1199
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1137 TTGCTTCACTGCATTTACCCTGAAGAGTTTATACGGTTTCATCGCTCTGTTTGCCTTAGG 1196
Query 1200 AGAGCTTCTTGTGTTTGCTACACAGGCTCCTGTAAACTATGTGTGTTTGCATTGTGTGAA 1259
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1197 AGAGCTTCTTGTGTTTGCAACACAGGCTCCTGTGAATTATGTGTGTTTGCATTGTGTGAA 1256
Query 1260 ACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGA 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 ACCAAGTTTACGACCATTATCAATGGCTATCTCCACCGTCGCAATTCACATATTCGGCGA 1316
Query 1320 TGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGGATCATATCAACAGTTGGAGAAAAAC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGGATCATATCAACAGTTGGAGAAAAAC 1376
Query 1380 CACACTGATTCTTACATCGATTCTGTTCTTAGCTGCTGCAATATGGTTTATAGG 1433
| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1377 GGCGTTGATTCTTACATCGATTCTGTTCTTAGCTGCTGCAATATGGCTTATAGG 1430
Score = 141 bits (76), Expect = 2e-32
Identities = 89/95 (94%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 1520 AGGGATATTCATAAACAGTGTAGATCGGTTTAATCAAGAAGAAACTGGAAGTGAGAACCC 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AGGGATATTCATAAACAGTGTAGATCGGTTTAATCAAGAAGAAACTGGAAGTGAGAACCC 1487
Query 1580 GAGGAGGCCAGAGCTATCG-TCTCGAACTCCATAA 1613
||||||| ||| |||||| | || ||||||||||
Sbjct 1488 AAGGAGGCAAGAACTATCGAT-TCTAACTCCATAA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5