BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22800.1 Length=1170 Score E Sequences producing significant alignments: (Bits) Value Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1 1779 0.0 Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1 449 2e-125 > Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1 Length=1159 Score = 1779 bits (963), Expect = 0.0 Identities = 1105/1171 (94%), Gaps = 20/1171 (2%) Strand=Plus/Plus Query 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCCTTTTCCTCTCGAAATCTCAAAG 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCTTTTTCCTCTCGAAATCTCAAAG 60 Query 61 ATAGATAAATTTTA-A-AGGCATAtttttttCATTTCGACTCAGATGGGTTTTGATGATA 118 |||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||| Sbjct 61 ATAGATAAATTTTACATAGGCATAATTTTTTCACTTCGACTCAGATGGGTTTTGATGATT 120 Query 119 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATA 178 ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 121 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCTCTCACCAACTCCAAATAATTACAGTA 180 Query 179 GTACCATCAGACAATCCTCCGTTTACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGG 238 || ||||||||| |||| ||| || ||||||||||||||||||||||||| ||||||| | Sbjct 181 GTGCCATCAGACGATCCCCCGGTTGCAAGCTCGAGCCGTCGTTGACTCTAAGCCTCTCCG 240 Query 239 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 300 Query 299 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAagagagagagacggtggcg 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 301 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTAGAG 360 Query 359 aagagtcgccggaggaggaagagatgacggagagagTTATAAGTGATTACCATGAAGATG 418 |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| Sbjct 361 AAGAGTCGCCGGAGGAGGAAGAGACGACGGAGAGAGTTATAAATGATTACAATGAAGATG 420 Query 419 AAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAACAACAATCTGCTCTTCTTG 478 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 AAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAAGAACAATCTGCTCTTCTTG 480 Query 479 AGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGAC 538 |||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 AGGATAGCTTCAAGCATCATAGCACCCTTAATCCCAAGCAAAAGCAAGTTCTGGCTAGAC 540 Query 539 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 600 Query 599 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAG 658 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct 601 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAAATGTTGTGAAACATTAACAG 660 Query 659 ATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCAGC 718 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 661 ATGAGAACATGAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCATC 720 Query 719 --CCTTTT-ACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAA 775 |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 721 AGCCTTTTTACATGCACATGCCTGCATCGACTCTAACGATGTGTCCTTCTTGTGAGATAA 780 Query 776 TCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCGGTGA 835 |||||| ||| ||||| |||||||||||| ||||||||||| ||||||||||||| Sbjct 781 TCGGCGCCGGTGGCGG---TAATGGAGGAGG---TGGCGGCAGCGTGGCTACCGCGGTGG 834 Query 836 TTGTAGATGGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCA 895 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 835 TTGTGGATGGAAGTACGGCCAAAGGAGCTTTCTCCATCTCCTCAAAGCCTCACTTCTTCA 894 Query 896 ACCCTTTTACTAACCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTAAT-TTTATTA 954 ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 895 ACCCTTTTACTAATCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTTTTATTTATTA 954 Query 955 CTTAAAATATTAATTTTCttttttttttGGGTGGCATTTTAACTAGTAGGAAGAACACAA 1014 ||||||||||||| ||| ||||| || ||||| ||||||||||||||||||||||| Sbjct 955 CTTAAAATATTAAATTT-TTTTT-----GG-TGGCAATTTAACTAGTAGGAAGAACACAA 1007 Query 1015 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1074 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1067 Query 1075 TTTTCAGTGGGATTGCTGGTTTGAGAAAAAGAATAGTTTGTAATTATTATTTTATTTGTA 1134 ||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||| Sbjct 1068 TTTTCAGTGGGATTGTTGATTTGGGAAAAATAATAGTTTGTAATTATTATTTTATTTGTC 1127 Query 1135 GAAAAA-GGTAAAATAGTCTTCACTTTAATT 1164 |||||| |||||||||||||||||||||||| Sbjct 1128 GAAAAAAGGTAAAATAGTCTTCACTTTAATT 1158 > Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1 Length=1150 Score = 449 bits (243), Expect = 2e-125 Identities = 678/877 (77%), Gaps = 73/877 (8%) Strand=Plus/Plus Query 99 TCAGATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCC-CTCAC 157 ||| |||||| |||||||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 123 TCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGG-CCTCTCAC 181 Query 158 CAATTCCAAATAATTACAAT-AGTACCATC-AG--A--------CA----A-TCCTCCGT 200 ||| || |||||||||||| | | ||||| || | || | || |||| Sbjct 182 CAACGCCTAATAATTACAATCA-TGCCATCAAGAAATCTTCCGCCACCGTAGACCACCGT 240 Query 201 -TTA-CAAGCTCGAGCCGTCGTTGACTCTATGCCTCTC-GG-GCGA-TCCCTCGGTTACC 255 | | || |||||| ||||||||||||||| ||||||| || | || | | | ||| Sbjct 241 CTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTCTCTGGTGAGAGTTAC-AAG--ACC 297 Query 256 --G--TGGTGACCGGAG-C--TGACCAGCTATGCCGTCAGACGTCATCTCACAGCGG-AG 307 | || || |||| | | ||||| | ||||| ||||| || ||||||||||| | Sbjct 298 AAGACTGCTG-CCGGCGCCGGGGACCAAATTTGCCGACAGACTTCGTCTCACAGCGGCA- 355 Query 308 TCTCTTCTTTCTCAAGCGGGAGGGT--GGTGA-AAagagagagagacggtggcga-agag 363 |||| |||||||| ||||| ||||| | || ||||||| | |||| ||||| ||| Sbjct 356 TCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTACGGCGGCGACGGAG 415 Query 364 tcgccggaggaggaagagatgacggagaga---gT-T-AT--A-AGTGA-T--T-ACCAT 411 | |||| ||| |||| |||||||||| || | | | ||||| | | | ||| Sbjct 416 AAG-AAGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCAT 474 Query 412 GAAGATGAAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAACAACAATCTGCT 471 ||||||||||||||| |||||||| | ||||| ||||| || || ||||||||||||||| Sbjct 475 GAAGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCT 534 Query 472 CTTCTTGAGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTG 531 |||| || || |||||||| ||||||||||||||||||||| ||||| ||| ||| Sbjct 535 GTTCTCGAAGATAGCTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAAATCTT 594 Query 532 GCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCC 591 || ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 595 GCGAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCT 654 Query 592 AGGACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACA 651 |||||||| || |||||||||||||| |||||||||||||||||||| || ||||| || Sbjct 655 AGGACAAAACTAAAGCAAACAGAAGTTGATTGTGAGTTTTTGAAGAAATGCTGTGAGACT 714 Query 652 TTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTG 711 ||| | |||||||| | ||| ||||| |||||| ||||||| || || | ||||| || Sbjct 715 TTAACGGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAAATG 774 Query 712 ACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAG 771 |||| || ||||||||||||||||| || ||||| | || | ||| |||||||||||| Sbjct 775 TCTCAACCTTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAG 834 Query 772 AGAATCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCG 831 ||| ||||||| || || || ||| | ||||||| |||||| || | ||| ||| Sbjct 835 AGACTCGGCGGTGGTGGTGGAGGT---GCCGGAGGAGTTGGCGG-AG-G----TACGGCG 885 Query 832 GTGATTGTAGATGGAAGTA-CGGCCAAAGGAGCTTTCTCTATC-TCCTCAAAGCCTCACT 889 | | ||| | |||| | | |||| |||||||||||||| ||| || ||||||||| | Sbjct 886 GCGGTTG-A--TGGA-GAAACGGCGAAAGGAGCTTTCTCCATCGTCA-CAAAGCCTCGTT 940 Query 890 TCT-TCAACCCTTTTACTAACCCATCTGCAGCTTGTT 925 ||| | |||||||| ||||| || |||||||| |||| Sbjct 941 TCTAT-AACCCTTTCACTAATCCTTCTGCAGCATGTT 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43650739965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5