BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22870.1 Length=1105 Score E Sequences producing significant alignments: (Bits) Value Ahg481149 jgi|Araly1|481149|fgenesh2_kg.4__209__AT2G22870.1 1640 0.0 Ahg480475 jgi|Araly1|480475|fgenesh2_kg.3__3176__AT2G22870.1 1485 0.0 > Ahg481149 jgi|Araly1|481149|fgenesh2_kg.4__209__AT2G22870.1 Length=1038 Score = 1640 bits (888), Expect = 0.0 Identities = 990/1040 (95%), Gaps = 3/1040 (0%) Strand=Plus/Plus Query 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1 AAAA-AAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTTTGA 59 Query 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCTA 119 Query 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191 ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| Sbjct 120 TCCCAAAAATCTCAGCCTCTTCGAACAATCCAGCAACAACAACGAATCGTTCGATCTCCG 179 Query 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251 ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 180 ACGCGGCCAAATTCGCTAAGTCAGTATTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239 Query 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCGGGTCATT 299 Query 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTCCTAAAG 371 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 300 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTGTCCTAAAG 359 Query 372 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 419 Query 432 ATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAGC 491 | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 420 ACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAGC 479 Query 492 TTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 551 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TTATAAATCATTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 539 Query 552 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 599 Query 612 TGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAGA 671 ||||||| |||| |||||| ||| |||| ||||| ||||||||||||||||||||||||| Sbjct 600 TGAATAGGGACACTCTTGTATGTATTCTTCTTCTGATCGATGCAAGTGTTCCTCCTCAGA 659 Query 672 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTGT 731 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 660 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTTGTGT 719 Query 732 TTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAAG 791 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 720 TTACGAAATGCGATAAAATGAAAGCGGCGAAAGGGAAAAGACCTGATGAGAACATCAAAG 779 Query 792 CTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGTA 851 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 780 CTTTTCAACAAATCATTAGAGAGAATTTCAAAGTACATCCTCCTTGGATTTTGACGAGTA 839 Query 852 GTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 911 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GTGTATCCGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 899 Query 912 GGGATCAATAGGTAGCGCGTAAATTTCGTAAACAAATGTTCGAAAAGGTCGGTTTTGAAT 971 |||||||||||| | | |||||||||| |||||||||||||||||||||||||| ||| Sbjct 900 GGGATCAATAGGAATCTTGTAAATTTCGCGAACAAATGTTCGAAAAGGTCGGTTTT-AAT 958 Query 972 -CATTGGTTATATCAAATTGTAGTTTTGTAATGTAACAGTAACTTTTGTATTTAAAGATA 1030 ||||||||||||||||| | |||||||||||||||| |||||||||||||| | ||||| Sbjct 959 ACATTGGTTATATCAAATGGCAGTTTTGTAATGTAACGGTAACTTTTGTATTCATAGATA 1018 Query 1031 AGATCATAAAGTGTTACTAC 1050 ||||| |||| ||||||||| Sbjct 1019 AGATCGTAAAATGTTACTAC 1038 > Ahg480475 jgi|Araly1|480475|fgenesh2_kg.3__3176__AT2G22870.1 Length=912 Score = 1485 bits (804), Expect = 0.0 Identities = 878/914 (96%), Gaps = 3/914 (0%) Strand=Plus/Plus Query 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1 AAAA-AAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCCCACTCCTTTAA 59 Query 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 119 Query 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191 ||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| Sbjct 120 CCCCAAAAGTCTCAGCCTCTTCGAACAATCCAACACCAACAACGAATCGTTCGATCTCCG 179 Query 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACGCGGCCAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239 Query 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311 ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCAGGTCATT 299 Query 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTC-CTAAA 370 | |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| Sbjct 300 CTCAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTG-CACTAAA 358 Query 371 GATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 430 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 359 GATGATCGTCCTGAGATTGCTATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 418 Query 431 AATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAG 490 || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 419 AACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAG 478 Query 491 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 538 Query 551 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 598 Query 611 TTGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAG 670 ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 599 TTGAATAGAGACACTCTTGTATGTGTTCTACTTCTGATCGATGCAAGTGTTCCTCCTCAG 658 Query 671 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTG 730 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 659 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACAGATGACTTTTGTG 718 Query 731 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAA 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 719 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATCAAA 778 Query 791 GCTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGT 850 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 779 GCTTTCCAACAAATCATTAGAGAGAACTTCAAAGTACATCCTCCTTGGATTTTGACGAGT 838 Query 851 AGTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTAC 910 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 839 AGTGTATCGGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTAAGAAACTAC 898 Query 911 TGGGATCAATAGGT 924 |||||||||||||| Sbjct 899 TGGGATCAATAGGT 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41172750360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5