BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22960.1 Length=555 Score E Sequences producing significant alignments: (Bits) Value Ahg932268 jgi|Araly1|932268|scaffold_400256.1 761 0.0 Ahg481168 jgi|Araly1|481168|fgenesh2_kg.4__228__AT2G22990.1 158 5e-38 Ahg932263 jgi|Araly1|932263|scaffold_400251.1 141 5e-33 Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 141 5e-33 > Ahg932268 jgi|Araly1|932268|scaffold_400256.1 Length=604 Score = 761 bits (412), Expect = 0.0 Identities = 517/566 (91%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 1 ATGAGAACTTTTTCACCCAAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCT 60 ||||||||||| |||| |||||||||||||| ||| | ||||| || |||||||||||| Sbjct 21 ATGAGAACTTTGTCACTGAAGTTGCTGCTTCTGCTTCTGCTTGTCTTGAGACATCATGCT 80 Query 61 GAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTT 120 || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 81 GATTCCGGCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTA 140 Query 121 GAAACC------GGGTA-CATC-G-GTA-TTGCTAAATATTGGGCCAATGACGAGAGGGT 170 |||||| ||||| || | | | | | |||| ||||||||||||| |||||||||| Sbjct 141 GAAACCGGGTTTGGGTACCA-CAGTGCACTAGCTACATATTGGGCCAATAACGAGAGGGT 199 Query 171 ACGTGAAGCTCTTCAAATAAGAAAGGGAAGTATAGGAAAATGGATACGATGTAATTCGAA 230 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 200 TCGTGAAGCTCTTCAAATCAGGAAGGGAAGTATAGGAAAATGGATACGATGTAATAGGAA 259 Query 231 TATACATTACGATGACGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 290 ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TATTGATTACAATGAAGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 319 Query 291 CGGATACCGATCTCTTATTTACAGTGGTGATCACGATATGGAGGTACCTTTCCTTGCAAC 350 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 320 CGGATACCGATCTCTTATTTACAGTGGTGATCACGACATGGAGGTACCTTTCCTTGCAAC 379 Query 351 TGAAGCTTGGATAAGATCTCTTAATTATCCTATTATTGATGATTGGAGGCCTTGGATAAT 410 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 380 TGAAGCTTGGATAAGATCTCTCAATTATCCTATCATTGATGATTGGAGGCCTTGGATAAT 439 Query 411 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTAT 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 440 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTGT 499 Query 471 CAA-GGCAAGTGGACACACTGCAGAGTATAAACCAGCGGAGAGCTTTATCATGTTCCAAC 529 ||| || | |||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 500 CAAAGG-AGGTGGGCACACTGCAGAGTATAAACCAGAGGAGAGCTTTATCATGTTCCAAA 558 Query 530 GATGGATCAGTGGCCAGCCTCTGTAA 555 ||||||| |||||||| ||||||||| Sbjct 559 GATGGATAAGTGGCCAACCTCTGTAA 584 > Ahg481168 jgi|Araly1|481168|fgenesh2_kg.4__228__AT2G22990.1 Length=1503 Score = 158 bits (85), Expect = 5e-38 Identities = 111/124 (90%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 19 AAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCTGAATCTGGCTCTATCGTC 78 ||||| |||||||| ||| ||||||| ||||| ||||||| ||| | || |||||| ||| Sbjct 92 AAGTTTCTGCTTCTGCTTCTACTTGTCTTAAGTCATCATGTTGATTGTGCCTCTATTGTC 151 Query 79 AAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACATCGGT 138 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 152 AAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACGTTGGT 211 Query 139 ATTG 142 |||| Sbjct 212 ATTG 215 > Ahg932263 jgi|Araly1|932263|scaffold_400251.1 Length=1260 Score = 141 bits (76), Expect = 5e-33 Identities = 107/122 (88%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 22 TTGCTGCTTCTTCTTTTACTTGT-TTTAAGACATCATGCTGAATCTGGCTCTATCGTCAA 80 ||||||||||| ||| | || | || || ||||||| ||| ||||||||||||||||| Sbjct 39 TTGCTGCTTCTGCTTCTGTTTATCTTGAA-CCATCATGTTGATTCTGGCTCTATCGTCAA 97 Query 81 GTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACATCGGTAT 140 ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 98 GTTCCTTCCCGGTTTTGAAGGCCCTCTTCCTTTTGAACTCGAAACCGGGTACATTGGTAT 157 Query 141 TG 142 || Sbjct 158 TG 159 > Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 Length=1574 Score = 141 bits (76), Expect = 5e-33 Identities = 86/91 (95%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 52 CATCATGCTGAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCT 111 ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 71 CATCATGTTGATTCTGGCTCTATCGTCAAGTTTCTTCCCGGCTTTGAAGGCCCTCTTCCT 130 Query 112 TTCGAACTTGAAACCGGGTACATCGGTATTG 142 |||||||| |||||||||||||| ||||||| Sbjct 131 TTCGAACTCGAAACCGGGTACATTGGTATTG 161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20260617759 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5