BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23080.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932290 jgi|Araly1|932290|scaffold_400278.1 1585 0.0
Ahg485358 jgi|Araly1|485358|fgenesh2_kg.5__1350__AT3G50000.1 883 0.0
Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1 91.6 1e-17
> Ahg932290 jgi|Araly1|932290|scaffold_400278.1
Length=1047
Score = 1585 bits (858), Expect = 0.0
Identities = 979/1038 (94%), Gaps = 6/1038 (1%)
Strand=Plus/Plus
Query 99 TTTTCAGATCGAAATTGATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTGTTCGTC 158
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 9 TTTTCAGATCAAAATTGATGTCGAAATCTAGGGTTTATACAGATGTTAACGTTGTTCGTC 68
Query 159 CTAAAGAGTATTGGGACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATG 218
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CCAAAGAGTATTGGGACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATG 128
Query 219 AGGTTGTGAGAAAAGTTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCA 278
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AGGTTGTGAGGAAAGTTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCA 188
Query 279 ATACGAATGAGCGTTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGATAAAGA 338
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ATACGAATGAACGCTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGATAAAGA 248
Query 339 GAGAGATCAAAATACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTGTATGATA 398
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 249 GGGAGATCAAAATACTTCAGAACCTCTGTGGTGGACCAAATATTGTTAAGCTGTATGATA 308
Query 399 TTGTTAGAGATGAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGTGTGG 458
|||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 TTGTCAGAGATGAGCACTCAAAAACACCTAGCTTGATATTTGAGTTTGTCAACAGTGTGG 368
Query 459 ACTTTAAAGTATTGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGC 518
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACTTTAAAGTATTGTATCCTACATTGACTGATTACGATATCCGGTACTATATTTATGAGC 428
Query 519 TTCTGAAGGCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTC 578
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 429 TTCTGAAGGCACTGGATTTCTGCCATTCTCAAGGAATAATGCATAGGGATGTTAAGCCTC 488
Query 579 ATAATGTCATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ATAATGTCATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTG 548
Query 639 AGTTTTACCATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGA-GATACTTCAAGGGT 697
|||| ||||||||||||||||||||||||||||| || || || | ||||||||||||||
Sbjct 549 AGTTCTACCATCCCGGAAAAGAGTATAATGTTCGAGTTGCTTC-ACGATACTTCAAGGGT 607
Query 698 CCCGAGCTTTTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGT 757
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 CCCGAGCTGCTAGTGGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGCCTTGGC 667
Query 758 TGCATGTTTGCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCAT 817
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 668 TGCATGTTTGCTGGCATGATATTTCGCAAGGAACCGTTCTTCTATGGTCATGATAATCAT 727
Query 818 GATCAACTTGTCAAAATTGCCAAGGTGTTGGGAACCAATGAGTTAGATCA-TTACCTAAA 876
||||||||||||||||| |||||||||||||||||| |||||||| | || |||||| ||
Sbjct 728 GATCAACTTGTCAAAATCGCCAAGGTGTTGGGAACCGATGAGTTAAA-CACTTACCTTAA 786
Query 877 CAAATATCAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACATGTCCCCAA 936
||||||||||| |||||||| ||||||||||||||||||||||| || ||| | ||
Sbjct 787 TAAATATCAGCTGGATCTTGAACCTCAACTGGAAGCACTTGTTGGGAGGCATAACAGGAA 846
Query 937 ACCATGGTCCAAGTTTATCAACGCGGACAACCAACATTTGGTCTCACCTGAGG-CAATTG 995
|||||||||||||||||| || || ||||| ||||| |||||||| || |||| || |||
Sbjct 847 ACCATGGTCCAAGTTTATTAATGCCGACAATCAACACTTGGTCTCGCCAGAGGGCA-TTG 905
Query 996 ATTTTCTCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCA 1055
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 906 ATTTTCTCGATAAGCTTCTTCGGTATGATCATCAAGACAGATTGACCGCAAGAGAAGCCA 965
Query 1056 TGGATCATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGACTACGAACTCAGT 1115
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGGATCATCCTTACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGACTACGAACTCAGT 1025
Query 1116 AAAACCGAAGCTTGATTG 1133
|||||||||||||||||
Sbjct 1026 GAAACCGAAGCTTGATTG 1043
> Ahg485358 jgi|Araly1|485358|fgenesh2_kg.5__1350__AT3G50000.1
Length=1393
Score = 883 bits (478), Expect = 0.0
Identities = 831/1001 (83%), Gaps = 26/1001 (3%)
Strand=Plus/Plus
Query 115 GATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTG-TTCGTCCTAAAGAGTATTGGG 173
||||||||||||| | || ||||| |||||||||| || |||| ||||| || |||||||
Sbjct 244 GATGTCGAAAGCTCGTGTGTATACCGATGTTAACG-TGATTCGACCTAAGGATTATTGGG 302
Query 174 ACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATGAGGTTGTGAGAAAAG 233
| ||||| |||||| |||||| ||||| | ||||||||||| ||||| ||||| || |
Sbjct 303 ATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAGGAAGG 362
Query 234 TTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCAATACG-AATGAG-CG 291
| || ||||| ||||||||||| ||||| || || | ||| | |||| | || ||| |
Sbjct 363 TGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATA-GCAACGAGAAG 421
Query 292 TTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGA-TAAAGAGAGAGATCAAAA 350
||| |||||||||| ||||| || || || |||||||||| | | |||||||| ||||
Sbjct 422 -TGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGA-AGAGAGATTAAAA 479
Query 351 TACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTG-TATGATATTGTTAGAGAT 409
|||||||||| || ||||| || || |||||||| |||||| | |||| |||| ||||||
Sbjct 480 TACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCT-TGATGTTGTCAGAGAT 538
Query 410 GAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGT-GTGGACTTTAAAGT 468
| ||||| |||||||| |||||| ||||||||| ||| |||||| | |||||||| ||
Sbjct 539 CAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACT-GACTTTAAGGT 597
Query 469 AT-TGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGCT-TCTGAAG 526
| |||||||||||||||||||||| || ||||| ||||| || |||||||| | |||||
Sbjct 598 -TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGT-TGAAG 655
Query 527 GCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTCATAATGTC 586
|||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||
Sbjct 656 GCATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTC 715
Query 587 ATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTGAGTTTTAC 646
||||| || ||| ||||||| |||||||| || ||||||||||| || |||||||||||
Sbjct 716 ATGATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTAT 775
Query 647 CATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGAGATACTTCAAGGGTCCCGAGCTT 706
||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| |||
Sbjct 776 CATCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTT 835
Query 707 TTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGTTGCATGTTT 766
|||| ||| ||||||| ||||||||||| || ||||||||||| |||||||||||||||
Sbjct 836 CTAGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTT 895
Query 767 GCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCATGATCAACTT 826
||||| ||||||||||| |||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 896 GCTGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTC 955
Query 827 GTCAAAATTGCCAAGGT-GTTGGGAACCAATGAGTTAG-AT-CATTACCTAAACAAATAT 883
||||||||||||||||| || |||||| |||| || | || || || || || || |||
Sbjct 956 GTCAAAATTGCCAAGGTACTT-GGAACCGATGAATT-GAATGCA-TATCTGAATAAGTAT 1012
Query 884 CAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACAT-GTCCCCAAACCATG 942
||| |||| ||||| ||||||| || ||||||||||| |||||| | | || || ||
Sbjct 1013 CAGTTAGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAG-CAGGAAGCCTTG 1071
Query 943 GTCCAAGTTTATCAACGCGGACAACCA-ACATTTGGTCTCACCTGAGGCAATTGATTTTC 1001
|||||| || |||||||| ||||| | |||||||||||||||||||| ||||||| |
Sbjct 1072 GTCCAAATTCATCAACGCCGACAA-TAGGCATTTGGTCTCACCTGAGGCGATTGATTACC 1130
Query 1002 TCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCATGGATC 1061
| || ||||| || | ||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1131 TGGACAAGCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTC 1190
Query 1062 ATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGA 1102
|||| || ||||||||||| | || ||||| |||||||||
Sbjct 1191 ATCCCTATTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGA 1231
> Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1
Length=498
Score = 91.6 bits (49), Expect = 1e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 1256 aaaaaaGGTTCCACACAAAGCTTCATTATATAATCATAGCAAGAGACTTATTGTTG 1311
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAAAAA-GTTCCAAACAAAGCTTCATTATATAATCATAGCAAGAGACTTATTGTTG 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5