BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23090.1 Length=580 Score E Sequences producing significant alignments: (Bits) Value Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1 737 0.0 > Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1 Length=498 Score = 737 bits (399), Expect = 0.0 Identities = 469/501 (94%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 57 AAAAATTCCATTTCGTATTTTTCTCTTCTTCCTCTTCTGAAAAATTAGGGTTTGAG---T 113 ||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | | Sbjct 1 AAAAATTCCATTTCGCATTTTTTTCTTCTTCCTCTTCTGCAAAATTAGGGTTTGTGTTCT 60 Query 114 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCCATGGCTC 173 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCGATGGCTC 120 Query 174 GTGCCAAAAACTTGGAGAAGGCTAAGGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 233 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 121 GTGCCAAAAACTTGGAGAAGGCAAAAGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 180 Query 234 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTCATCTGCACGACATCGG 293 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 181 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTTATCTGCACAACATCGG 240 Query 294 AAGTGAAATGCAGGGAGCACGCGGAGGCGAAGCATCCGAAAGCCGATGTTG-TCGCTTGT 352 |||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 241 AAGTGAAATGCAGGGAGCACGCAGAGGCGAAGCATCCGAAAGCCGATGTTGAT-GCTTGT 299 Query 353 TTCCCTCACCTCAAGAAGTGATGAAAGCTAT-TAT---CTCAACTATAAAGGATTCCAAT 408 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| Sbjct 300 TTCCCTCACCTCAAGAAGTGATGAAAACTATCTATTATCTCAACTATAAAGGATTCCAAT 359 Query 409 GTATAACGTATGGATCCTCATCTTTCCTATGTTTGTATCAAAGTCTCGACAA-ATTTTAT 467 ||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||| || Sbjct 360 GTAAAACGTATGGATCCTCTTCTTTCCTATGTTTGTATCAAAGTCTTGACAGTATTT-AT 418 Query 468 GGTTTCTATTTCTCTCTACTTGTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 527 ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 GGTTTCTGCTTCTCTTTACTTTTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 478 Query 528 GCTTTGTGTGGAACCtttttt 548 ||||||| |||||| |||||| Sbjct 479 GCTTTGTTTGGAAC-TTTTTT 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21214507484 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5