BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23130.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899620 jgi|Araly1|899620|Al_scaffold_0004_270 501 3e-141
> Ahg899620 jgi|Araly1|899620|Al_scaffold_0004_270
Length=543
Score = 501 bits (271), Expect = 3e-141
Identities = 477/570 (84%), Gaps = 39/570 (7%)
Strand=Plus/Plus
Query 62 ATGACTCGCAATATTCTCTTGACGGTTACATTGATCTGCATTGT-TTTCATCACCGTCGG 120
||||||||||| |||||||| || |||||||||||||||||||| | || || |||||
Sbjct 1 ATGACTCGCAAAATTCTCTTAACAGTTACATTGATCTGCATTGTATCTC-TCGGTGTCGG 59
Query 121 TGGCCAATCTCCGGCCACCGCACCGATCCATTCTCCTTCTACATCTCCTCATAAGCCTAA 180
|||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 60 TGGCCAATCTCCGGCCACCGCACCGAGCCATTCTCCTTCTATATCTCCTCAAAAGCCTAA 119
Query 181 ACCCACATCTCCCGCCATTTCTCCAGCTGCTCCA--A-CGCCGGAATCCACGGAGGCTCC 237
| ||||||||||||||||||||||| || | | | | || | | |||||||||||
Sbjct 120 AGCCACATCTCCCGCCATTTCTCCATCTCCGGAATTAACTCCC-A--CGACGGAGGCTCC 176
Query 238 GGCGAAGACTCCGGTAGAAGCACCTGTAGAGGCTCCTCCTTCTCCTACACCTGCTTCTAC 297
| || ||||||| |||||| |||| || ||||||||||||||||||||||||| ||
Sbjct 177 GACGCAGACTCCAGTAGAACCACCCGTCGAGGCTCCTCCTTCTCCTACACCTGAGGCT-- 234
Query 298 ACCTCAGATCTCTCCGCCCGCTCCTTCACCGGAGGCTGATACTCCTTCAGCTCCGGAG-A 356
|| | |||||||| | ||||||||||||||||||||| ||||| ||||||| | |
Sbjct 235 ---TC---T-TCTCCGCCTGGTCCTTCACCGGAGGCTGATACACCTTCTGCTCCGGTGGA 287
Query 357 TTGCACCTTCAGCTGATGTTCCGGCTCCAGCTCTGA-CAAAACATAAGAAGAAGACAAAG 415
| || || ||||||| || ||||||||||||| || |||| |||||||||||| | |
Sbjct 288 T-GCGCCAACAGCTGACGTCCCGGCTCCAGCTCCGAGCAAA-CATAAGAAGAAG-C---G 341
Query 416 AAGCATAAGACCGCTCCGGCTCCTGGACCAGCTTCGGAGCTTTTAAGCCCGCCTGCTCCG 475
||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 342 -----TAAGACCGCCCCGGCTCCCGGACCAGCTTCGGAGATTTTAAGCCCGCCTGCTCCG 396
Query 476 CCCGGAGAAGCTCCTGGTCCTGGACCAAGCGATGCTTTCTCTCCTGCCGCTGACGATCAG 535
||||| ||||||||||||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 397 CCCGGGGAAGCTCCTGGTCCTGGACCAAGTGATGCTTTCTCCCCCACCGCCGACGATCAG 456
Query 536 AGCGGAGCACAAAGAATAAGTGTTGTGATACAAA-TG-G-TGG-G--AGCTGCGGCAATC 589
||||||||| ||| || |||||| | ||||||| || | ||| | ||||| |||||||
Sbjct 457 AGCGGAGCAGAAAAAAGAAGTGT-G--ATACAAAATGTGATGGTGGGAGCTGTGGCAATC 513
Query 590 GCATGGTCTCTACTTGTTCTAGCCTTCTAA 619
|||||| ||||||||| |||||||||||||
Sbjct 514 GCATGGCCTCTACTTGCTCTAGCCTTCTAA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5