BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23310.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932325 jgi|Araly1|932325|scaffold_400313.1 1029 0.0
> Ahg932325 jgi|Araly1|932325|scaffold_400313.1
Length=676
Score = 1029 bits (557), Expect = 0.0
Identities = 642/682 (94%), Gaps = 10/682 (1%)
Strand=Plus/Plus
Query 105 acagagagagTATCCACCGATGGAATCCGCAGCAACGGCTGTTG-T-AC-CTCCGGCAGC 161
||| ||||||||||||||||||||||||||||| ||||||| || | | |||||| |||
Sbjct 2 ACACAGAGAGTATCCACCGATGGAATCCGCAGCTACGGCTGGTGTTCCCACTCCGGTAGC 61
Query 162 CGCCGCCACCACCGCCACCGCCACCGATGATAATCTCCAATCAAGCGACTCATCATCTCC 221
||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 62 CGCCGCCACCA---CCA---TCACCGATGATAATCTCCAATCGATCGACTCATCATCTCC 115
Query 222 CGCCGACGCCGTTAACCGATTGATCCACGCCTTTTCGCAGCGACAACAACATCTTCTCGA 281
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 116 CGCCGACGCCGTTAACCGATTGATCCACGCCGTTTCGCAGCGACAACAACACCTTCTCGA 175
Query 282 CAAAACGGTTCCTCACGTTCTCTATCGATGGATCGCATGTCTCTGTGTTGTATTGATCTA 341
||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||||
Sbjct 176 CAAAACGGTGCCTCACGTTCTCTATCGGTGGATCGGTTGCCTCTGTGTCGTATTGATCTA 235
Query 342 CATCGTTCGTGTTTACTTTGTGGAAGGCTTCTACATCATCACTTACGCCATCGGCATCTA 401
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CTTCGTTCGTGTTTACTTTGTGGAAGGCTTCTACATCATCACTTACGCCATCGGAATCTA 295
Query 402 CCTTTTGAATCTCATCATTGCTTTTCTATCTCCTCAAGAAGATCCCGAAGCTTCTCTCAC 461
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 296 CCTTTTGAATCTCATCATTGCTTTTCTTTCTCCTCAAGAAGATCCTGAAGCTTCTCTCAC 355
Query 462 TTCCGGTGGTTCTCTTCCTACTCGGAGATCCGATGAGTATCGTCCTTTCGTTCGCCGTCT 521
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 TACCGGTGGTTCTCTTCCTACTCGGAGATCCGATGAGTATCGTCCTTTTGTTCGCCGTCT 415
Query 522 CCCTGAGTTCAAATTCTGGTTATCGATCATAAGGGCTTTCATCATCGGATTTATGATGAC 581
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 CCCTGAGTTCAAATTCTGGTTATCGATCATAAGGGCATTCATCATCGGATTTATGATGAC 475
Query 582 GTTCTTCGAGGTGTTTGATGTACCTGTATTCTGGCCAATACTTCTCTTCTACTGGGTGAT 641
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 476 GTTCTTCGACGTGTTTGATGTACCTGTTTTCTGGCCAATACTTCTTTTCTACTGGGTGAT 535
Query 642 GTTGTTTTTCCTTACGATGAGGAAACAGATACAGCATATGATCAAATACAGATATGTCCC 701
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 536 GTTGTTTTTCCTTACGATGAGGAAACAGATACAACATATGATCAAATACAGATATGTTCC 595
Query 702 TTTCTCTTTTGGGAAAAAGCAGTATGGAAAGAAACCGGCTCCAACAGAGAGCAGTGAATG 761
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTTCTCTTTCGGGAAAAAGCAGTATGGAAAGAAACCGGCTCCAACAGAGAGCAGTGAATG 655
Query 762 ATCAATCAAAACTGTTCAGGTC 783
||| |||||| |||||||||||
Sbjct 656 ATCGATCAAA-CTGTTCAGGTC 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5