BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23390.1 Length=1753 Score E Sequences producing significant alignments: (Bits) Value Ahg481209 jgi|Araly1|481209|fgenesh2_kg.4__269__AT2G23390.1 2276 0.0 > Ahg481209 jgi|Araly1|481209|fgenesh2_kg.4__269__AT2G23390.1 Length=1573 Score = 2276 bits (1232), Expect = 0.0 Identities = 1495/1615 (93%), Gaps = 45/1615 (3%) Strand=Plus/Plus Query 29 aaaTCATCAGCGACCACTGTGACTCCACTTGAGCGCCGGAGCCGCCGCCGTCGCCGTCGC 88 |||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||| | | Sbjct 1 AAATCATCAGCGACCACTGTGATTCCACTTGATCGCCGGAGTCGCCGTCGTCGCCG-C-C 58 Query 89 GTCGGAACTCCATTTTCACGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 148 | | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 59 G-C-G-------------CGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 103 Query 149 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTTCGTCGATTCCATCGTCGCT 208 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 104 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTCCGTCGATTCCATCGTCGCT 163 Query 209 GCGGAAATTTGTGGAAGAAAGAAAATGTTAGGAGTTCAAGACGATCATCTTCGGTTACTG 268 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 164 GCGGAAATTTGTGGAAGAAAGGAAATGTTAGGAGTTCAAGACGATCATCTACGGTTACTG 223 Query 269 CTATGTTTTGGAAGTCCAATAAGCCTGCGGAAGTAAAGGAATTCGATATATCACTTAGAG 328 |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| | Sbjct 224 CTATGTTTTGGAAGACCAATAAACCTGCGGAAGTACGGGAATTCGATATATCACTTAGGG 283 Query 329 ATTACACTCTAACTGAATCAAACATTGAGGAAGCTTTGGAAAACAAGCCGAAGCAAAAGG 388 ||||||||||||||| || | | | | |||| | |||||| || ||| | Sbjct 284 ATTACACTCTAACTGGAT----C----A-G-A-CTTT-G------AGCCGAGGCGAAATG 325 Query 389 TGATTTCACTATCAGTTGTTTCTTCAATATTTGAGATACCACAAGCTGAATGGGATGCAT 448 ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 326 TGATTTCACTATCAGCTGTTTCTTCAATATTAGAGATACCACCAGCTGAATGGGATGCAT 385 Query 449 GTGCGTTGGATTCTTCTCAACCTGAAAGCTATAATCCATTTCTAAGTTATGGATTTCTTT 508 |||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| Sbjct 386 GTGCTTTGGATTCTTCTCAACCTGAAAGTTATAATCCATTTCTAAGTCATGGTTTTCTTT 445 Query 509 CCAGTTTAGAAGATACTGGTTGTGCCGTTCGGGAAACAGGTTGGATGCCATTACACATTG 568 ||||||||||||| || || |||||||| ||||||||||||||||||||||| || |||| Sbjct 446 CCAGTTTAGAAGAGACGGGATGTGCCGTCCGGGAAACAGGTTGGATGCCATTGCATATTG 505 Query 569 TTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATT 628 ||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||| Sbjct 506 TTGCAAAGGATGAATCTGAGAGTATTTTGGGCGTCGTCCCACTTTATCTCAAAAGCCATT 565 Query 629 CTTATGGCGAATTTGTTTTTGATCATTCTTGGGCTGATGCATACCGAAGTTTTGGCGGAA 688 | ||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||| Sbjct 566 CCTATGGCGAATTTGTTTTTGATCACTCTTGGGCTGATGCATACCGCAGTTTCGGTGGAA 625 Query 689 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACTGGTCCTAGGATTC 748 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 626 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACCGGCCCTAGGA-TC 684 Query 749 TT-ATCCGTGATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACG 807 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 TTAATCCGTAATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACA 744 Query 808 GAATTGGCATCAAAGTTACAAGTTTCATCTTTGCACATTACATTTCCGTCTGGAGCTGAG 867 ||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||| |||| Sbjct 745 GAACTGGCAGCTAAGTTACGAGTTTCATCTTTGCACATTACATTTCCTTCTGGAGTTGAG 804 Query 868 TGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAA 927 ||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||| || Sbjct 805 TGGAACAAATTGAAGGAGAAAGGCTTCTCACAGAGGATTGGAATGCAGTATCACTGGCAA 864 Query 928 AATCGTGATTATAAAAATTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 987 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 865 AATCGTGACTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 924 Query 988 AATATCCGACAGGAACGCAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 1047 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 925 AATATCCGGCAGGAACGTAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 984 Query 1048 GGAGATGATATAAAGGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACT 1107 |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 985 GGAGATGAAATAAAGGCTAGGCATTGGGATTCCTTCTATGACTTCTACAGGAACACAACT 1044 Query 1108 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1104 Query 1168 TTGGGAGACAAGGTATTGCTTGTT-TTAGCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1226 || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1105 TTAGGAGACAAGGTATTGCTTGTTCTT-GCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1163 Query 1227 ATTGAATCTCATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCCGACTC 1286 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1164 ATTGAATCTTATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCTGATTC 1223 Query 1287 CTATTATCCTAGTCTCCATTTTGAAGCATGCTATTACCAGGCAATTGAAGCAGCGATAGA 1346 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1224 CTATTATCCTAGTCTCCATTTTGAAGCGTGCTATTACCAGGCAATTGAAGCAGCAATAGA 1283 Query 1347 GCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTA 1406 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1284 GCTTAATCTGAAAACGGTGGAAGCTGGAGCTCAGGGTGAGCATAAGATTCAGCGAGGCTA 1343 Query 1407 CCTTCCCGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1466 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1344 CCTTCCTGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1403 Query 1467 AGACGAGTTTTTAGTGCGCGAATCAAATCAGATGGATTATGTCATCAGACTGATGCATGA 1526 ||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||| Sbjct 1404 AGACGAGTTTTTAGTGCGCGAATCAAATCAGGTGGATTTTGTCATCAAACTGTTGCATGA 1463 Query 1527 AGATGGACCCTTCAAAGAGAAAATAGAATAGATGCATTT-ATATCTTGGTTATCGCAAAC 1585 ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| Sbjct 1464 AGATGGACCCTTCAAAGAGAACATAGAATAGATGCATTTTATATCTTGGTTACCGCAAAC 1523 Query 1586 ATTCTTGTATATCTTAATTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1640 ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1524 ATTCTTGTATA----A-TTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65781853115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5