BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23580.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1 1389 0.0
Ahg899674 jgi|Araly1|899674|Al_scaffold_0004_324 872 0.0
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 409 3e-113
> Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1
Length=1044
Score = 1389 bits (752), Expect = 0.0
Identities = 938/1026 (91%), Gaps = 20/1026 (2%)
Strand=Plus/Plus
Query 3 AGAAGAAAGAAAACAATGGAGAAGAA-CAACAAGAAGCGGTTTGTCCTCGTCCATGGGCT 61
|||||||| |||||||||||||| || |||| ||||||||||||| ||||||||||||||
Sbjct 1 AGAAGAAATAAAACAATGGAGAA-AATCAACCAGAAGCGGTTTGTGCTCGTCCATGGGCT 59
Query 62 GTGCCACGGCGCTTGGTGTTGGTACAAGGTGAAAACGCATCTGGAGGCTGTAGGTCACTG 121
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGCCACGGCGCGTGGTGTTGGTACAAGGTGAAAACGCATCTGGAGGCTGTAGGTCACTA 119
Query 122 TGTGACCGCGGTGGATCTAGCTGCATCCGGTATAAATATGACTAGA-TTGGAAGAGATTC 180
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 120 TGTGACCGCGGTGGATCTAGCTGCATCCGGTATAAATATGACTAGAGTT-GAAGAGACTC 178
Query 181 AGACTTTGAAGGATTACTGCAAACCTTTGCTTGAGTTACTGAACTCACTTGGCTCGGATG 240
| ||| | ||||||||||||||||| ||||||||||| || | ||| ||||||||||||
Sbjct 179 ATACTCTCAAGGATTACTGCAAACCGTTGCTTGAGTTTCTCAGCTCGTTTGGCTCGGATG 238
Query 241 ACGATAAGGTGATTCTTGTTGCGCATAGTATGGGAGGAATACCTGCTGCTCTCGCTTCTG 300
|||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||
Sbjct 239 ACGATAAGGTGATTCTTGTTGCTCATAGTATGGGAGGAATACCCGCTGCTTTCGCTGCTG 298
Query 301 ACATATTCCC-TAGTAAGATTGCTACTATTGTTTTCTTGACAGCTTTTATGCCCGACACA 359
| |||||||| || |||||||||| || ||||||||||||| ||||| ||||||||||||
Sbjct 299 ATATATTCCCTTA-TAAGATTGCTTCTGTTGTTTTCTTGACGGCTTTCATGCCCGACACA 357
Query 360 AGAAACCTACCTGCTTATGTTTACCAAAAGCTAATCAGAAGCGTTCCACAAGAAGGATGG 419
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 AGAAACCCACCAGCTTATGTTTACCAAAAGCTAATCAGAAGCGTCCCACAAGAAGGATGG 417
Query 420 TTGGACACCGTGTTTGGAACGTATGGGAAACATGAATGTCCTCTAGAGTTTGCTCTTTTT 479
||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 418 TTGGACACCTTGTTTGGAACGTACGGGAAACCTGAATGTCCTCTAGAGTTTGCTCTTTTT 477
Query 480 GGACCAAAGTTCATGGCCAAGAATTTGTATCAACTCTCTCCGGTCCAAGATCTTGAATTG 539
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 478 GGACCGAAGTTCATGGCCAAGAATTTGTATCAACTCTCTCCGGACCAAGATCTTGAATTG 537
Query 540 GCGAAAATGTTGGTGAGAGTAAACCCCATCATTACAAATAATCTGGCAGGGACAAGAAGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCGAAAATGTTGGTGAGAGTAAACCCCATCATTACAAATAATCTGGCAGGGACAAGAAGC 597
Query 600 TTTAGTGAGGAAGGGTACGG-TACCGTTACACGTATATATATTGTATGTGGAGAGGACAT 658
|| ||||||||||| ||||| | || ||||||| |||||||| ||||||||||||||| |
Sbjct 598 TTCAGTGAGGAAGGTTACGGAT-CCATTACACGAATATATATCGTATGTGGAGAGGACTT 656
Query 659 GGCGGTACCCGAGGATTACCAGTGGTGGATGATCAAGAACTTTCCGCCAAAAGAAGTAAT 718
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 GGTAGTACCCGAGGATTACCAGTGTTGGATGATCAAGAACTTTCCGCCAAAAGAAGTAAT 716
Query 719 GGAGATCAAATGTGCAGATCATATGGCAATGTTCTCCAAGCCTCACAAACTATGTGCTCT 778
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 GGAGATCAAGTGTGCAGATCATATGGCAATGTTCTCCAAGCCTCACGAACTATGTGCTCT 776
Query 779 TCTCGTGGAGATTGCATGTAAATATGCCTAAATAATCTTAAGATCTTCACTACAGT--T- 835
|||| |||||||||||||||||||| ||||||||| ||||||||| || ||||||| |
Sbjct 777 TCTCTTGGAGATTGCATGTAAATATTCCTAAATAAACTTAAGATCGTCTCTACAGTAGTT 836
Query 836 -ACAAAGTTTATAGCTTCAACTAGAATTATAAGTAAATAATCATACTCATTAAAAATTAT 894
||||| |||| |||||||||| ||||||||| |||| || |||||| || ||||||||
Sbjct 837 TACAAAATTTA--GCTTCAACTACAATTATAAGCAAATGATAATACTCGTTCAAAATTAT 894
Query 895 TTCATGATTCTGTCTTATAAA-CACTATTTTCAGAAA--AGAGCAAGAAATCAAAAATGT 951
||||||||||| ||||| ||| ||||||||| || | ||| |||||| ||||||
Sbjct 895 TTCATGATTCTATCTTA-AAAGCACTATTTTTAGTATGTAGAT-AAGAAAGCAAAAAAA- 951
Query 952 GAGAGAAAAAATTGTAACTCCTAAACTTCTTTGAAAAATGGATAAAACTCTCACGTTGAA 1011
|||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 952 GAGAAAAAAAATTGTAACTCCTAAATTTCTTTGAAAAATGGATATAACTCTCATGTTGAG 1011
Query 1012 GATGAA 1017
||||||
Sbjct 1012 GATGAA 1017
> Ahg899674 jgi|Araly1|899674|Al_scaffold_0004_324
Length=798
Score = 872 bits (472), Expect = 0.0
Identities = 694/801 (87%), Gaps = 16/801 (2%)
Strand=Plus/Plus
Query 18 ATGGAGAAGAACAACAAGAAGCGGTTTGTCCTCGTCCATGGGCTGTGCCACGGCGCTTGG 77
|||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1 ATGGAGAATAACAACCAGAAGCGGTTTGTGCTCGTCCATGGGGTGTGCCACGGCGCATGG 60
Query 78 TGTTGGTACAAGGTGAAAACGCATCTGGAGGCTGTAGGTCACTGTGTGACCGCGGTGGAT 137
|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 ACTTGGGACAAGGTGAAAACGCAGCTGGAGGCTGCAGGTCACTGTGTGACCGCGGTGGAT 120
Query 138 CTAGCTGCATCCGGTATAAATATGACTAGATTGGAAGAGATTCAGACTTTGAAGGATTAC 197
||||||||||| ||| |||| ||||| ||| ||||||||||||||||| | |||||||||
Sbjct 121 CTAGCTGCATCGGGTGTAAACATGACCAGAGTGGAAGAGATTCAGACTCTAAAGGATTAC 180
Query 198 TGCAAACCTTTGCTTGAGTTACTGAACTCACTTGGCTCGGATGACGATAAGGTGATTCTT 257
|||||||| ||||||||||| |||| ||| |||||| | |||||||||||||||||||||
Sbjct 181 TGCAAACCGTTGCTTGAGTTTCTGAGCTCGCTTGGCCCAGATGACGATAAGGTGATTCTT 240
Query 258 GTTGCGCATAGTATGGGAGGAATACCTGCTGCTCTCGCTTCTGACATATTCCCTAGTAAG 317
|| || ||||| |||||||||||| | ||| | || ||| ||||||| | | || |||||
Sbjct 241 GTAGCTCATAGCATGGGAGGAATATCAGCTTCACTTGCTGCTGACATCTACGCTTGTAAG 300
Query 318 ATTGCTACTATTGTTTTCTTGACAGCTTTTATGCCCGACACAAGAAACCTACCTGCTTAT 377
|||||| |||| || ||| |||||||||| | ||||||||||| ||||| ||||| ||||
Sbjct 301 ATTGCTGCTATAGTCTTCGTGACAGCTTTCAGGCCCGACACAAAAAACCCACCTGTTTAT 360
Query 378 GTTTACCAAAAGCTAATCAGAAGCGTTCCACAAGAAGGA-TGGTTGGACACCGTGTTTGG 436
|||||| ||||| || ||||||| |||||||||| ||| ||||||||||||| || |||
Sbjct 361 GTTTACGAAAAGGTACCCAGAAGCATTCCACAAGA-GGAATGGTTGGACACCGAGTGTGG 419
Query 437 AACGTATGGGAAACATGAATGTCCTCTAGAGTTTGCTCTTTTTGGACCAAAGTTCATGGC 496
||| || |||| || ||| ||||||||| || | ||||||| ||||||||||| |||||
Sbjct 420 AACCTACGGGACACCTGATTGTCCTCTACAGAGTACTCTTTTGGGACCAAAGTTTATGGC 479
Query 497 CAAGAATTTGTATCAACTCTCTCCGGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAG 556
|||||| ||||||||| |||||| || |||||||||||||||| ||| | |||||||||
Sbjct 480 CAAGAAAATGTATCAACACTCTCCAGTTCAAGATCTTGAATTGGTGAAGACGTTGGTGAG 539
Query 557 -AGTAAACCCCATCA-TTACAAATAATCTGGCAGGGACAAGAAGCTTTAGTGAGGAAGGG 614
| ||| || || | ||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 540 GAC-AAATCCGAT-AGTTACAAACAATCTGGCAGGGACAATAAGCTTCAGTGAGGAAGGG 597
Query 615 TACGG-TACCGTTACACGTATATATATTGTATGTGGAGAGGA-CATGGCGGTACCCGAGG 672
||||| | ||||||||||||||||||||||||| |||||||| | || || |||||| |
Sbjct 598 TACGGAT-CCGTTACACGTATATATATTGTATGCGGAGAGGATCTTGT-GGAACCCGAAG 655
Query 673 ATTACCAGTGGTGGATGATCAAGAACTTTCCGCCAAAAGAAGTAATGGAGATCAAATGTG 732
|||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 656 ATTACCAGCGCTGGATGATCACGAACTTTCCGCCAAAAGAAGTAATGGAAATCAAATGTG 715
Query 733 CAGATCATATGGCAATGTTCTCCAAGCCTCACA-AACTATGTGCTCTTCTCGTGGAGATT 791
||||||| ||| ||||||||||||||||||| | || | |||||||||||| ||||||||
Sbjct 716 CAGATCACATGCCAATGTTCTCCAAGCCTCA-AGAAGTTTGTGCTCTTCTCCTGGAGATT 774
Query 792 GCATG-TAAATAT-GCCTAAA 810
||| | ||||||| ||| |||
Sbjct 775 GCA-GATAAATATTGCC-AAA 793
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 409 bits (221), Expect = 3e-113
Identities = 409/495 (83%), Gaps = 31/495 (6%)
Strand=Plus/Plus
Query 329 TGTTTTCTTGACAGCTTTTATGCCCGACACAAGAAACCT-ACC-TGCTTATGTTTA-CCA 385
||| ||| |||||||| | ||||||||||| | | | || ||| | ||| | | | |
Sbjct 315 TGTCTTCGTGACAGCTATCATGCCCGACACCACACA-CTCACCATCCTT-CG-TAATGGA 371
Query 386 AAAGCTAATCAGAA-GCGTTCCACAAGAAGGATGGTTGGACACCGTGTTTGGAACGTATG 444
||||||| | || || || ||| ||||| |||||| |||||||||||| || || |
Sbjct 372 TAAGCTAA-GACAAGGCATTTCACGAGAAGAATGGTTAGACACCGTGTTT---AC-TA-G 425
Query 445 -G-GAAACATGAATGTCCTCTAGAGTTTGCTCTTTTTGGACCAAAGTTCATGGCCAAGAA 502
| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 426 CGAGAAACCTGACTGTCCTCGAGAGTTTTCTCTTTTTGGACCAAAATTCATGGCCAAGAA 485
Query 503 TTTGTATCAACTCTCTCCGGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAGA--GTA 560
|||||||| | ||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 486 CTTGTATCAGTTGTCTCCAGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAGGCCGCA 545
Query 561 AACCCCATCA-TTAC-AAATAATCTGGCAGGGACAAGAAGCTTTAGTGAGGAAGGGTACG 618
| || || | |||| ||| |||||||||| || ||| ||||| ||||||||||| ||||
Sbjct 546 A-CC--ATTAATTACGAAA-AATCTGGCAGAGAAAAGTAGCTTCAGTGAGGAAGGCTACG 601
Query 619 G-TACCGTTACACGTATATATATTGTATGTGGAGAGGA-CATGGCGGTACCCGAGGATTA 676
| | ||||| ||||||||||||||||||| | | |||| | || |||||||||||||||
Sbjct 602 GAT-CCGTTCCACGTATATATATTGTATGCGAAAAGGATCTTGT-GGTACCCGAGGATTA 659
Query 677 CCAGTGGTGGATGATCAAGAACTTTCCGCCAAAAGAAGTAATGGAGATCAAATG-TGCAG 735
|||| | | ||||||||| ||||||||| ||||||||||||||||||||| | |||||
Sbjct 660 CCAGCGTTCGATGATCAACAACTTTCCGGTGAAAGAAGTAATGGAGATCAAA-GATGCAG 718
Query 736 ATCATATGGCAATGTTCTCCAAGCCTCACA-AACTATGTGCTCTTCTCGTGGAGATTGCA 794
|||||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 719 ATCATATGCCAATGTTCTCCAAGCCTCA-AGAACTATGTGCTCTTCTCTTGGAGATTGCA 777
Query 795 TGTAAATATGCCTAA 809
|||||||||||||
Sbjct 778 AATAAATATGCCTAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5