BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23600.1 Length=950 Score E Sequences producing significant alignments: (Bits) Value Ahg481226 jgi|Araly1|481226|fgenesh2_kg.4__286__AT2G23600.1 1243 0.0 Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1 761 0.0 Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 436 1e-121 Ahg944170 jgi|Araly1|944170|scaffold_700399.1 63.9 2e-09 > Ahg481226 jgi|Araly1|481226|fgenesh2_kg.4__286__AT2G23600.1 Length=888 Score = 1243 bits (673), Expect = 0.0 Identities = 802/864 (93%), Gaps = 10/864 (1%) Strand=Plus/Plus Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTATGTGTCACGGCGCG 60 Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCTTA 152 ||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| || Sbjct 61 TGGTGCTGGTACAAGGTGAAGCCGCTGCTCGAGGCTTCAGGCCATCGTGTAACCGCCGTA 120 Query 153 GACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGAA 212 ||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct 121 GACCTAGCTGCTTGCGGTATAGACACTACCAGGTCAATCACTGAAATTTCCACATGCGAA 180 Query 213 CAATATTCTGAGCCATTGATGCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTGTA 272 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAATATTCTAAGCCATTGATGCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTGTG 240 Query 273 CTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCGAT 332 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 241 CTCGTTGGTCATAGCTTCGGAGGTTTGAGTTTAGCCATAGCCATGGATAAGTTTCCAGAC 300 Query 333 AAAATCTCTGTCTCTGTCTTCGTGACTGCATTCATGCCCGACACCAAACACTCACCATCG 392 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 301 AAAATCTCTGTCTCTGTCTTCGTGACTGCTTTCATGCCTGACACCAAACACTCACCATCT 360 Query 393 TTCGTCGAGGAAAAGTTTGC---AAGCAGCATGACACCAGAAGGATGGATGGGCTCTGAG 449 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct 361 TTCGTCGAGGATAAGTTTGCAATAAGCAACATGACACCAGAAGGATGGATGGGCACTGAG 420 Query 450 CTCGAGACATATGGTTCAGATAATTCCGGCTTGTCTGTGTTCTTCAGCACCGACTTCATG 509 |||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||| Sbjct 421 CTCGAGACGTATGGTTCAGAGAATTCTGGCTTGTCTGTGTTATTCAGCACTGACTTCATG 480 Query 510 AAGCACCGTCTCTACCAACTTTCTCCTGTGGAGGATCTTGAGCTTGGATTGCTTCTAAAG 569 |||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||| Sbjct 481 AAGCACCGTCTCTACCAACTTTGTCCTATTGAGGATCTTGAGCTTGGATTACTTCTAAAG 540 Query 570 AGGCCTAGTTCATTGTTTATTAATGAATTATCGAAGATGGAGAACTTTTCTGA-GAAAGG 628 |||||| | ||||||||||||||||||||||||| | || ||||||||||||| | |||| Sbjct 541 AGGCCTGGATCATTGTTTATTAATGAATTATCGAGGGTGAAGAACTTTTCTGATG-AAGG 599 Query 629 GTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAACATTATCTCGGAAGA 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAACATTATCTCGGAAGA 659 Query 689 CCATCAACGATGGATGATCCATAATTATCCGGCGAATTTAGTGATTGAGATGGAAGAGAC 748 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 660 ACATCAACGATGGATGATCGATAATTATCCGGCGAATTTAGTGATTGAGATGGAAGAGAC 719 Query 749 TGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTATTGGCAATCGC 808 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 720 AGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTATTGGAAATCGC 779 Query 809 TGACAATTTCTGTTAAATAATATTTTGATGAAAATGTATTTGGAGTGGATACA--A-TCA 865 ||||| |||| |||||||||||||||||||||||||||||||||| |||||| | ||| Sbjct 780 CGACAAATTCTCTTAAATAATATTTTGATGAAAATGTATTTGGAGTTGATACATTAATCA 839 Query 866 AACGTGT-T-CTAAAATGGATCTT 887 | |||| | |||||||||||||| Sbjct 840 AGTGTGTGTTCTAAAATGGATCTT 863 > Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1 Length=879 Score = 761 bits (412), Expect = 0.0 Identities = 705/844 (84%), Gaps = 29/844 (3%) Strand=Plus/Plus Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92 ||||||||||| |||||||| ||||| || || |||||||||||| ||||||| |||||| Sbjct 31 ATGAGTGAGGAAAAGAGGAAACAACATTTTGTACTAGTACATGGTTCGTGCCATGGCGCA 90 Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCT-T 151 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| | | Sbjct 91 TGGTGCTGGTACAAGGTTAAGCCGCTGCTAGAGGCGTTGGGCCATCGTGTAACCGC-TGT 149 Query 152 AGACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGA 211 ||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| || Sbjct 150 GGACTTAGCTGCTTCTGGTATAGACACAACCAGGTCGATCACTGACATCCCTACATGCGA 209 Query 212 ACAATATTCTGAGCCATTGAT-GCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTG 270 |||||| || ||||||||| | | |||| | || |||||||| |||||||||||||||| Sbjct 210 ACAATACTCGGAGCCATTG-TCGAAGCTGCTAACCTCATTGCCAAATGATGAGAAGGTTG 268 Query 271 TACTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCG 330 | |||||||||||||||||||| || |||| |||||| |||||||||| |||||||||| Sbjct 269 TGCTCGTTGGTCATAGCTTTGGTGGCTTGAACTTAGCCATAGCCATGGAAAAGTTTCCCG 328 Query 331 ATAAAATCTCTGTCTCTGTCTTCGTGACTGCATTCATGCCCGACACCAAACACTCACCAT 390 | |||||||||||| |||| ||| ||||||| ||||||||||||||| |||||||||||| Sbjct 329 ACAAAATCTCTGTCGCTGTATTCTTGACTGCTTTCATGCCCGACACCGAACACTCACCAT 388 Query 391 CGTTCGTCGAGGAAAAGTTTGCAAGCAGCATGACACCAGAAGGATGGATGGGCTCTGAGC 450 | |||||| ||| ||||||| ||||| |||| ||||||||| |||||||||| | || Sbjct 389 CCTTCGTCTTGGACAAGTTTGGAAGCAACATGCCACCAGAAGCATGGATGGGCACGGAAT 448 Query 451 TCGAGACA-TATGGTTCAGATAATTCCGG-CTTGTCTGTGTTCTTCAGC-ACCGACTTCA 507 |||| || || |||||||| ||||| || || | | ||||||| ||| | || |||| Sbjct 449 TCGA-ACCGTACGGTTCAGACAATTCTGGACT-GAGTATGTTCTTTAGCCAT-GAGTTCA 505 Query 508 TGAAGCACCGTCTCTACCAACTTTCTCCTGTGGAGGATCTTGAGCTTGGATTGCTTCTAA 567 ||||| | |||||||||| |||||||| || ||||||||||| || ||||| ||| ||| Sbjct 506 TGAAGGTCGGTCTCTACCAGCTTTCTCCAGTTGAGGATCTTGAACTGGGATTACTTTTAA 565 Query 568 AGAGGCCTAGT-TCATTGTTTATTAATGAATTATCGAAGATGGAGAACTTTTCTGA-GAA 625 ||||||| || || || |||||||| || |||||||||||| ||||||| || || ||| Sbjct 566 AGAGGCC-AGGATCGTTATTTATTAACGATTTATCGAAGATGAAGAACTTCTCAGATGAA 624 Query 626 AGGGTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAA--CATTATCTCG 683 || ||||| |||||||||||||||| ||| ||||||||||||||||| || | || | Sbjct 625 -GGATATGGTTCTGTTCCTCGAGCTTTCATAGTGTGCAAAGAGGACAAAGCAAT-TC-CA 681 Query 684 GAAGACCATCAACGATGGATGATCCATAA-TTATCCGGCGAATTTAGTGATTGAGATGGA 742 ||||| || ||| |||||||||| |||| || ||||| ||||||||||||||| ||||| Sbjct 682 GAAGAACACCAAAGATGGATGATTGATAACTT-TCCGGTGAATTTAGTGATTGAAATGGA 740 Query 743 AGAGACTGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTAT--TG 800 |||||| ||||||||||||||||| ||||| ||||| | ||| | || || || | || Sbjct 741 AGAGACAGATCATATGCCAATGTTCTGCAAGCCTCAGCAACTCTGCGATCA-CT-TCCTG 798 Query 801 GCAATCGCTGACAATTTCTGTTAAAT-AATATTTTGATGAAAATGTATTTGGAGTGGATA 859 | ||||||||| ||||| |||| ||| ||| || | ||||||| |||| ||| | |||| Sbjct 799 GAAATCGCTGAAAATTT-TGTTTAATCAATCTTCT--TGAAAATATATT-GGATTTGATA 854 Query 860 CAAT 863 ||| Sbjct 855 TAAT 858 > Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 Length=792 Score = 436 bits (236), Expect = 1e-121 Identities = 324/367 (88%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCATGGCGCC 60 Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCTTA 152 ||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||| Sbjct 61 TGGTGCTGGTACAAGGTTAAGCCGCAGCTCGAGGCTTCAGGCCACCGTGTAACCGCCTTA 120 Query 153 GACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGAA 212 || |||||||| ||||||||| ||| ||||||||||||||||| || || ||||| ||| Sbjct 121 GATCTAGCTGCCTCCGGTATAAACATGACCAGGTCAATCACTGATATATCCACATGCGAA 180 Query 213 CAATATTCTGAGCCATTGATGCAGCTAATGACTTCATTGCC-GAATGATGAGAAGGTTGT 271 || || || |||||||||| ||| |||||||| ||| | || || ||||||||||||||| Sbjct 181 CAGTACTCAGAGCCATTGACGCAACTAATGACCTCACTACCAGA-TGATGAGAAGGTTGT 239 Query 272 ACTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCGA 331 |||||||| |||||||| |||||||||||||||||| | |||||||||| |||||| | Sbjct 240 GCTCGTTGGGCATAGCTTAGGAGGTTTGAGTTTAGCCGTGGCCATGGATATGTTTCCAAA 299 Query 332 TAAAATCTCTGTCTCTGTCTTCGTGACTGC-ATTCATGCCCGACACCAAACACTCACCAT 390 ||||||||||| |||||||||||||| || || |||||||||||||| ||||||||||| Sbjct 300 CAAAATCTCTGTTTCTGTCTTCGTGACAGCTAT-CATGCCCGACACCACACACTCACCAT 358 Query 391 CGTTCGT 397 | ||||| Sbjct 359 CCTTCGT 365 > Ahg944170 jgi|Araly1|944170|scaffold_700399.1 Length=827 Score = 63.9 bits (34), Expect = 2e-09 Identities = 56/67 (84%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 81 TGCCACGGCGCATGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGT 140 ||||||||||||||||||||||||||||| || || | || || |||| ||||| ||| Sbjct 51 TGCCACGGCGCATGGTGCTGGTACAAGGTCAAACCGGTGCTGGAAGCTTCAGGCCACCGT 110 Query 141 GTAACCG 147 || |||| Sbjct 111 GTGACCG 117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35263698225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5