BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23672.1
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481233 jgi|Araly1|481233|fgenesh2_kg.4__293__AT2G23672.1 846 0.0
> Ahg481233 jgi|Araly1|481233|fgenesh2_kg.4__293__AT2G23672.1
Length=682
Score = 846 bits (458), Expect = 0.0
Identities = 630/708 (89%), Gaps = 32/708 (5%)
Strand=Plus/Minus
Query 42 ACACATAGCATTAG-GTTATTCCTAAGATTTCTGGGCTTCTGGTCCTAAAATCCCATTCA 100
||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACATATAGCATTAGATTTA-TCCTAAGATTTCTGGGCTTCTGGTCCTAAAATCCCATTCA 624
Query 101 CTACTGACGTAGCGACAAGAACTCCGACGAACTCAGCCGCCACGACGGCTCCAGCTTGTG 160
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 623 CGACTGACGTAGCGACAAGAACTCCGACGAACTCAGCCGCCACAACGGCTCCGGCTTGTG 564
Query 161 TCAATCCATTAAAGCTAACCGCCGTCACGATTTCCTTCTCTGCCGTCTCTACACCTCTCT 220
||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 563 TCAATCCATTAAAACTAACTGCCGTCACGATTTCCTTCTCCGCCGACTCTACACCTCTCT 504
Query 221 CCGCCGCTTCTAATCCTTTCTCCGCCGCATCAACGCCTTTCTCCGCCGTCTCAAAGCctt 280
||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct 503 CCGCCGCTTCTAATCCTCTCTCCGCCGCATCAACACCTTTCTCCGCCGACTCAAAGCCTT 444
Query 281 ctttcacgatctccaccgcttcttcttctgc-tttcttcagtttctttcttATACCAAAT 339
| ||||||||||||||||||||||||||||| ||| || || |||||||||||||||||
Sbjct 443 CCTTCACGATCTCCACCGCTTCTTCTTCTGCCTTT-TTGAGCTTCTTTCTTATACCAAAA 385
Query 340 AACGGAATATTCTCCGCCATTGATGCAGGCTGAAGTCCCGTCA-CTACCGTCGCTGCCGT 398
|| ||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||
Sbjct 384 AAAGGAATATTCTCCGCCATTGATGCAGACTGAAGTCCTGTCATC-ACCGTCGCTGCCGT 326
Query 399 CAACGAAAATAACAGATTCCTGCGAGAGGCGCCGGTCAGCGAGAACGAAGAAAGCGCGGG 458
|| ||||| | |||||||||||||| |||||||| || ||||| || | | |||||||
Sbjct 325 CAGGGAAAAGAGGAGATTCCTGCGAGAAGCGCCGGTTAGTGAGAAAGATGGAGGCGCGGG 266
Query 459 TTTGTTAGAATGCGCCGCTCGTGGGCTAACATGCGCGGTTCTTGCGCAACGCGCCTGAAG 518
|||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 265 TTTGCTAGAATGCGCCGCTCGTGGGCTAACATGCGCATTTCTCGCGCAACGCGCCTGTAG 206
Query 519 AGCTCCACTGCCGCCGCTGAGTAAAGAAAGCGAAACAGTCGAAGCCATTTTTTAGATGAT 578
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 205 AGCTCCACCACCGCCGCTGAGTAAAGAAAGCGAAACAGTGGAAGCCATTTTTTAGAT--- 149
Query 579 CTCACAAGAAACGAAAAAAGCTCTCAGATGTGAAATAGAAAATACGAAAAGTTTTGATAA 638
||| || |||||||||||||||||| |||||| ||||||||
Sbjct 148 CTC------------------TC--AGATGTGAAATAGAAAATTCGAAAAAATTTGATAA 109
Query 639 TATATAAGATAACAAAATAATTTCATTGTCAATTGACGTGACACGTCATCTCCATTGAGA 698
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 108 TATACAAGATAACAAAATAATTTCATTGTCAAATGACGTGACACGTCATCTCCATTGAGA 49
Query 699 TTCTTTGATAAA--TGGGTAT-AAAAAAGATTATAATTAAAGAATAAT 743
|||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 48 TTCTTTGATAAAAATGGGTAACAAAAAAGATTTTAATTAAAGAATAAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28020343995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5