BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23690.1 Length=894 Score E Sequences producing significant alignments: (Bits) Value Ahg932367 jgi|Araly1|932367|scaffold_400355.1 817 0.0 > Ahg932367 jgi|Araly1|932367|scaffold_400355.1 Length=533 Score = 817 bits (442), Expect = 0.0 Identities = 504/534 (94%), Gaps = 3/534 (1%) Strand=Plus/Plus Query 46 ATTGAGTCAAACC-AAACCAATGGGTATATGCAGCTCGTACGAGTCGACACAAGTCGCAA 104 ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 1 ATTGAGTCAAACCAAAACCAATGGGTATATGTAGCTCGTACGACTCGACACAAGTCGCGA 60 Query 105 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACAAGTCCGGTCAAAGTTG 164 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTG 120 Query 165 GTTACGTGTTACAAAAGAATCCGATGTGTTTCATATGTAACTCCGATGATATGGACTTTG 224 |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 GTTATGTGTTACAGAAGAATCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTG 180 Query 225 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAACTGTACTTCG 284 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 181 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTG 240 Query 285 CTCTTCCTTTAAGTTCGCTTCATCATTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCTG 344 |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 241 CTCTTCCTCTAAGCTCGCTTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCG 300 Query 345 TTAAAGCTAGCTCTGCTCTTATGAGAAGTGGTGGTTCATGTGGCCGAGATAAATGTCGGT 404 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| Sbjct 301 TTAAAGCTAGCTCTGCTCTAATGAGAAGTGGTGGTTCTTGTGGCCGAGATAAATGTAGGT 360 Query 405 GTCGTCGGAAATGTGT-GTCTCCGGTGATCTTTTCTGCTCGAAGAGTGGCGGCGGTGGGA 463 |||| ||||||||||| | |||||||||| ||||||||||| ||||| |||||||||||| Sbjct 361 GTCGCCGGAAATGTGTAG-CTCCGGTGATATTTTCTGCTCGGAGAGTAGCGGCGGTGGGA 419 Query 464 GCTAATGGAGAGACAAGGAATGGGAAAAGACGCGGTGGTGGTGGTAGCGGGAGGAGGAAG 523 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 420 TCTAATGGAGAGACGAGGAACGGGAAAAGACGCGGTGGCGGTGGTAGCGGGAGGAGGAAG 479 Query 524 TATGCGGCGAAGTTGAGTAAGATAGAAGAATGAAGGGTAGTTTGGTGATTTAGT 577 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 480 TATGCGGCGAAGTTGAGTAAGATTGAAGAGTGAAGGGTAGTTTGGTGATTTAGT 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33128814873 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5