BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23780.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481240 jgi|Araly1|481240|fgenesh2_kg.4__300__AT2G23780.1 1395 0.0
> Ahg481240 jgi|Araly1|481240|fgenesh2_kg.4__300__AT2G23780.1
Length=1034
Score = 1395 bits (755), Expect = 0.0
Identities = 969/1066 (91%), Gaps = 39/1066 (4%)
Strand=Plus/Plus
Query 8 GGAACTTTCTTTCCCAACAACAGTAAGACTCTG-TTTTTT-CCCA-AGATGTCTGGTTTC 64
|||||||||||| || |||||||||||||||| |||||| |||| | ||||||||||||
Sbjct 1 GGAACTTTCTTT-CC--CAACAGTAAGACTCTGTTTTTTTCCCCACA-ATGTCTGGTTTC 56
Query 65 CTCTTTTGTTTCGTCCAAATCTCTACTTTTTAGGGATCTTGTCCTTCTCTTTTCTGCTGA 124
||||||||||||||||||| | | ||| || || | |||| ||||||
Sbjct 57 CTCTTTTGTTTCGTCCAAA----T-C--TTT----AT-ATG------T-TTTTGTGCTGA 97
Query 125 TTAAAACCCTCGAATTTGCTCCAAT-TCGACGCGAAAAAGGGCATTGAGATGGTGAATGG 183
||||||||||||| |||| |||||| || | | |||| ||||||||||||||||||||
Sbjct 98 TTAAAACCCTCGACTTTGATCCAATCTCTTCAAG-AAAACGGCATTGAGATGGTGAATGG 156
Query 184 AGAATCATCAACTAGTACGTCTTACTCTGATAGTAACAATGACACAAATGATCAAGGAGG 243
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 157 AGAATCATCAACTAGTACGTCTTACTCTGATAATAACAATGGTGCAAATGATCAAGGAGG 216
Query 244 AGACTTTGAATGTAACATTTGTTTCGAACTAGCTCAAGATCCGATTGTCACTCTCTGTGG 303
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 217 AGACTTTGAATGTAACATTTGTTTTGAGTTAGCTCAAGATCCGATTGTCACTCTCTGTGG 276
Query 304 CCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCACCACCATTCACATTCTCAAGA 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 277 CCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCACCACCATTCGCATTCTCAAGA 336
Query 364 ATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTTGTTCCTCTTTACGGTAGAGG 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 337 ATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTTGTTCCTCTTTATGGTAGAGG 396
Query 424 CAAGAACCAGACTGACCCGAGATCAAAACGTTATCCGGGTTTACGGATTCCTAACCGACC 483
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 397 CAAGAACCAGACTGACCCGAGATCTAAACGTTATCCGGGGTTGCGGATTCCTAACCGACC 456
Query 484 AACAGGTCAAAGACCTGAGACTGCTGCTCCTCCTCCTCAGCCTGAAGCTGCGAGTAATTT 543
||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 457 AACAGGTCAAAGACCCGAGACCGCGGCTCCTCCTCCTCAGCCTGAAGCAGCGAGTAATTT 516
Query 544 TTTCAACTACGGTATTGGTTTGATGGGTGGAATTATGCCGATGATGGCGACTACGAGGTT 603
||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct 517 TTTCAACTATGGTATTGGTTTGATGGGTGGAATTATGCC-A--ATGGCGACTACTAGGAT 573
Query 604 TGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTACCTTCTTTGTTTAACTTTCAGTTTCA 663
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 574 CGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTGCCTTCTTTGTTTAACTTTCAGTTTCA 633
Query 664 TGGATTTCATGATGCTACGCTTTATGGTTCAACACCGGGTTATCCTTACGGTGGTTATCA 723
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 634 TGGATTTCCCGATGCTACGCTTTATGGTTCAACAGCGGGTTACCCTTACGGTGGTTATCA 693
Query 724 TAACGGTTTCCGTGGAGTTCCTCCTCGTGGACAAGAGCGTCCTATGGCTCGTGGAGGAAA 783
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 694 TAATGGTTTCCGTGGAGTTCCTCCTCATGGACAAGAGCGTCCGATGGCTCGTGGAGGAAA 753
Query 784 CCAAAGTGATGCATTTCTGAAGAATATCCTCTTTTTTGTTGGAATCTGTGTGGTGATATT 843
|||||| |||||| ||||||||||||| | | |||||||||| || |||||| ||||
Sbjct 754 CCAAAGCGATGCAACTCTGAAGAATATCTTAATAGTTGTTGGAATTTGCGTGGTGTTATT 813
Query 844 TCTCAT-CTGGTGAAAACGAATCACATTTGGTGTATTTCCAGGTATGATCAAACTTACTT 902
||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 814 TCTT-TGCTGGTGAAAACGAATCACATTTGGTTTATTTCCAGGTATGATCAAACTCACTT 872
Query 903 ACTTGGTGCAAGTTGTGTATGTAAATATGGTAATAGCTGAGTGTACT-TGTCTGCTATTT 961
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 873 ACTTGGTGCAAGTTGTGTATGTAAATATGGTAATAGCTGAGTGT-CTGTGTTTGCTATTT 931
Query 962 CGACGTTGTTATTGTATTTTTGTTTTGAAGATGAACCGTGAGTCTACAAGCTTTTTTACA 1021
| |||| |||||||||||||||||||||||||||| | |||||||| ||||||||| |||
Sbjct 932 CAACGTCGTTATTGTATTTTTGTTTTGAAGATGAAACTTGAGTCTATAAGCTTTTT-ACA 990
Query 1022 CAACTCTTT-TGTTGCTTTTGTGTTTTGTCTAAGCATCTTGTGAAA 1066
||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 991 CAACTCTTTGTCTTGCTT--GTGTTTTGTCTAAGCATCTTGTGAAA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5