BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23790.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932377 jgi|Araly1|932377|scaffold_400365.1 1583 0.0
Ahg353160 jgi|Araly1|353160|fgenesh1_pg.C_scaffold_7000333 566 2e-160
> Ahg932377 jgi|Araly1|932377|scaffold_400365.1
Length=1051
Score = 1583 bits (857), Expect = 0.0
Identities = 987/1051 (94%), Gaps = 4/1051 (0%)
Strand=Plus/Plus
Query 49 TTTCTTGGGAGAGCAACAATGGCGATGAGGAAGCTTTTATCGAAGAAACTCTTCAATATC 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTTCTTGGGAGAGCAACAATGGCGATGAGGAAGCTTTTATCGAAGAAACTCTTCAATATC 64
Query 109 ACGAATGTTGCTTCACAGAGTCTTATGAATTGTCGCATTTCGTCTTCTTCGTTAGCCGTA 168
||||||||||| ||||||||||||||||||||||| || || || ||||| |||||||||
Sbjct 65 ACGAATGTTGCATCACAGAGTCTTATGAATTGTCGTATATCATCGTCTTCATTAGCCGTA 124
Query 169 CGAACCAGAGTTCCGAATGATTCAACAGATACAACCAAAATCGCACCGGAGCCTGGAGAT 228
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 125 CGAACCAGAGTTCCGACGGATTCAACAGATACAACCAAAATCTCACCGGAGCCTGGAGAT 184
Query 229 TTGGCGATGTCGCGAAGGTTCATGCATAACAGTGCTATGATTAGGCCGGCGGAGATTATG 288
| |||| ||||| |||| ||||| || || |||||||||||| | |||||||||||
Sbjct 185 TCAACGATTTCGCGGCGGTTTATGCACAATAGCGCTATGATTAGG-C--CGGAGATTATG 241
Query 289 CAGATGCCGGTGGGAGAGAGTTTGATTGAGAAACTCCGTGAGATTGATGGAAGCAAGGAT 348
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 242 CAGATGCCGGTTGGAGAGAGTTTGATTGAGAAACTCCGTGAAATCGATGGAAGCAAGGAC 301
Query 349 CGGATTCGATTAGACGGACTTTCTCCGCCGGAGAGGGAGACGAGTTTGACGGTGGCGGAT 408
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGGATTCGATTAGACGGACTTGCTCCGCCGGAGAGGGAGACGAGTTTGACGGTGGCGGAT 361
Query 409 ACGAAGAAGCTGCTTAGAGCGGCGCAGATCGAGATTGTGAAATCGAAGCTAAGAGAAACG 468
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 ACGAAGAAGCTGCTAAGAGCGGCGCAGATCGAGATTGTGAAATCGAAGCTTAGAGAAACC 421
Query 469 GGAAGAAGCTGGATGCCGTATAAGGAGTTTGTTAGCGTTTGTGGTGAAGCTTCTTCAGAT 528
||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 422 GGAAGAAGCTGGATGACGTATTCGGAATTCGTTAGCGTTTGTGGTGAAGCTTCTTCAGAT 481
Query 529 CCAGATCTCGGATCTAAAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTTTTG 588
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CCAGATCTCGGATCTAGAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTTTTG 541
Query 589 GGAGATTCCGTTTGTATTAGACCTGATCAGGTTACCAAATCCATTGAAGGACTGCTTCCT 648
||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 542 GGAGACTCCGTTTGTATTAGACCTGATCAGGTTACAAAATCCATTGAAGGGTTGCTTCCT 601
Query 649 TTGCCAAAGATCCATAACCCAAATGACCCTCGGAGAATCGAGTTTAAAGAGCTTGAAGCT 708
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 602 TTGCCAAAGATTCATAACCCAAATGACCCACGGAGAATCGAGTTGAAAGAGCTCGAAGCT 661
Query 709 GAAAAGGCAGTGATCGATGTGAAAGCTCACACTTTGGTGCGGAAAGAGCTTTGGGCTGGT 768
| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 662 GTAAAGGCAGTGATCGATGTGAAAGCGCACTCTTTGGTGCGGAAAGAACTTTGGGCTGGT 721
Query 769 CTCGGTTACTTGATCCTACAGACTGCGGGGTTCATGAGGCTAACGTTTTGGGAACTCTCG 828
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 722 CTTGGTTACTTGATCCTACAGACCGCGGGGTTCATGAGGCTAACGTTTTGGGAACTCTCG 781
Query 829 TGGGACGTGATGGAGCCAATCTGTTTCTATGTCACGTCCGTGTACTTTATGGCTGGTTAC 888
||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 TGGGATGTGATGGAACCGATCTGTTTCTATGTCACGTCCGTATACTTTATGGCTGGTTAC 841
Query 889 GCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAGCAGGTTC 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAGCAGGTTC 901
Query 949 GAGGCGAAACAGAGAAAGTTGATGAATGAGTATGAGTTTGATCTGGAGAGGTATAATGAA 1008
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 902 GAGGCGAAACAGAGAAAGTTGATGAATGATTATGAGTTTGATCTCGAGAGGTATGATGAA 961
Query 1009 CTGAAGAAGCTGTTTTGCTCTAAGCCTTCGGATCATGTTTCCAAGATTCTTGGAGCTATC 1068
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 962 CTGAAGAAGCTGTTTTGCTCTAAGCCTTCAGCTCATGTTTCCAAGATTCTTGGAGCTATC 1021
Query 1069 AAGAGTTAAAATTTTGATTAGGGGAAAAATT 1099
|||| ||||| |||||| |||| |||||||
Sbjct 1022 AAGAATTAAA-TTTTGAATAGGAAAAAAATT 1051
> Ahg353160 jgi|Araly1|353160|fgenesh1_pg.C_scaffold_7000333
Length=963
Score = 566 bits (306), Expect = 2e-160
Identities = 758/968 (78%), Gaps = 64/968 (7%)
Strand=Plus/Plus
Query 127 AGTCTTATGAATTGTCGCATTTCGTCTTCTTCGTTAGCCGTACGAACCAGAGTTCCGAAT 186
||||| ||||| ||||| | ||||||||||||| ||||||| ||||| || ||||| ||
Sbjct 13 AGTCTCATGAACTGTCGTACTTCGTCTTCTTCGCTAGCCGTGCGAACTAGGGTTCCTAAA 72
Query 187 GATTCAACA-GATACAACCAAAATCGCA-CCGGAGCCTGGAGATTTGGCGATGTCGCGAA 244
|| | | | || | ||||| || | | || |||||||| |||||| |||| || | ||
Sbjct 73 GA-T--ATAGGAGA-AACCACGATTG-ATCCAGAGCCTGGGGATTTGACGATTTCTCAAA 127
Query 245 GGTTCATGCATAACA-GTGCTATGATTAGGCCGGCGGAGATTA-TGC-A-GATGCCGGTG 300
|||| ||||||| | | | |||| | || | || | | | | | |||| | ||
Sbjct 128 GGTTTTTGCATAA-ATTTTCCATGAAT-GG--GATTGATACGACTTCGATGATGTCAATG 183
Query 301 GGAGAGAGTTTGATTGAGAAACTCCGTGAGATTGATG-GAAGCAAGGATCGGATTCGATT 359
|||||||||||||| | ||| || || || |||| ||| ||||||||||||||||||
Sbjct 184 GGAGAGAGTTTGATGGGGAAGCTTAAAGAAATGGATGTGAA-CAAGGATCGGATTCGATT 242
Query 360 AGACGGACTTTCTCCGCCGGA-GAGGGAGAC----GAGTTTGACGGTGGCGGATAC--GA 412
|||||||||||||| ||| | || |||||| | | || || || || | || ||
Sbjct 243 AGACGGACTTTCTCATCCGAAGGA-GGAGACGTTGGGGCTT-ACTGT-GC-AAGACGTGA 298
Query 413 AGAAGCTGCTTAGAGCGGC-GCAGATCG-AGATTGTGAAATCGAAGCT-AAGAGAAACGG 469
||||| |||| |||||| | | |||||| || |||| ||| | || || | || ||||
Sbjct 299 AGAAGTTGCTAAGAGCGTCAG-AGATCGAAG-TTGTTAAAACAAAACTGTTG-GAGACGG 355
Query 470 GAAGAAGCTGGATGCCG-TA-TAAGGAGTTTGTTAGCGTTTGTGGTGAAGCTTCTTCAGA 527
||| || |||||| || || | || |||||| | |||||| |||| |||||| ||
Sbjct 356 GAAAAATCTGGAT-TCGTTACT-CCGATTTTGTTCGTGTTTGTAGTGATTCTTCTTTGGA 413
Query 528 TCCAGATCTC--GGATCTAAAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTT 585
||| || | ||| || ||||| ||||||||||||||||||| |||||| ||||||
Sbjct 414 TCC--TTCGCAAGGACCTTTGATCGCAAAGATGCTTGATGATTCAGGAAACGTTATCGTT 471
Query 586 TTGGGAGATTCCGTTTGTATT-AGACCTGATCAGGTTACCAAATCCATTGAAGGACTGCT 644
|||||| | || |||||| || |||||||||||||| |||||||||||||| || |||||
Sbjct 472 TTGGGAAACTCTGTTTGT-TTAAGACCTGATCAGGTAACCAAATCCATTGAGGGGCTGCT 530
Query 645 TCCTTTGCCAAAGATCCATAACCCAAATGACCCTCGGAGAATCGAGTTTAAAGAGCTTGA 704
|||||| ||| |||| ||||||||||||||||| | |||| ||| | ||||| |||||
Sbjct 531 TCCTTTACCACAGATTCATAACCCAAATGACCCGAGAAGAAAGGAGCTAAAAGATCTTGA 590
Query 705 AGCTGA-AAAGGCAGTGATCGATGTGAAAGCTCACACTTTGGTGCGGAA-AGAGCTTTGG 762
|||| | |||| | || |||||| |||||| || |||||||| ||| ||||||||||
Sbjct 591 AGCT-ATAAAGACGGTCATCGATCAGAAAGCACATTCTTTGGTG-AGAAGAGAGCTTTGG 648
Query 763 GCTGGTCTCGGTTACTTGATCCTACAGACTGCGGGGTTCATGAGGCTAACGTTTTGGGAA 822
|||||| | |||||||||||| | ||||| || | |||||||||||||||||||||||||
Sbjct 649 GCTGGTTTGGGTTACTTGATCATCCAGACCGCAGCGTTCATGAGGCTAACGTTTTGGGAA 708
Query 823 CTCTCGTGGGACGTGATGGAGCCAATCTGTTTCTATGTCACGTCCGTGTACTTT-ATGGC 881
||| | ||||| || ||||| || ||||||||||||||||| || || || ||| |||||
Sbjct 709 CTCACATGGGATGTTATGGAACCGATCTGTTTCTATGTCACATCGGTATA-TTTCATGGC 767
Query 882 TGGTTACGCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAG 941
||||| || |||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 768 GGGTTATGCTTTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTGAAGGGTTTTACCAAAG 827
Query 942 CAGGTTCGAGGCGAAACAGAG-AAAGTTGATG-AATGAGTATGAGTTTGATCT-GGAGAG 998
|||||| ||||| |||||||| ||| | |||| ||| | | || |||||| | || |||
Sbjct 828 CAGGTTTGAGGCTAAACAGAGGAAACT-GATGGAATCTG-AGGATTTTGATGTTGG-GAG 884
Query 999 GTATAATGAACTGAAGAAGCTGTTT--TGCTCTAAGCCTTC-GGAT-CATGTTTCCAAGA 1054
||| |||| ||||||||||||||| | | | |||||||| || | | |||||||||||
Sbjct 885 GTACGATGAGCTGAAGAAGCTGTTTAATCC-C-AAGCCTTCAGG-TGC-TGTTTCCAAGA 940
Query 1055 TTCTTGGA 1062
||||||||
Sbjct 941 TTCTTGGA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5