BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23840.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474712 jgi|Araly1|474712|fgenesh2_kg.1__4666__AT2G23840.1 1397 0.0
> Ahg474712 jgi|Araly1|474712|fgenesh2_kg.1__4666__AT2G23840.1
Length=1042
Score = 1397 bits (756), Expect = 0.0
Identities = 949/1038 (91%), Gaps = 30/1038 (3%)
Strand=Plus/Plus
Query 11 TTGGATCACCCTAACTTCTTCGTTTCGTTTCAATCAAATGGCACATTTCTCTGCTAGACT 70
|||||||||||||| |||| ||| |||||||||||||||||||||||| | |||||
Sbjct 1 TTGGATCACCCTAA---CTTC--TTC--TTCAATCAAATGGCACATTTCTCTTCGAGACT 53
Query 71 TAAGCTTCTCTCAAGCAACGATGGATTATCTTTTGGTGTAGATTCGAGAGACCAATTTCG 130
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 54 TAAGCTTCTCTCAAGCAACGATGGATTGTCATTTGGTGTAGATTCCAGAGACCAATTGCG 113
Query 131 GCAGAGCCTTTACATGGCCGGTGGTGGATCTCCTTTGGTTCCAATACGCATGAGCCGACT 190
||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 114 GCAAAGCCTTTACATGGCCGGTGGTGGAACTCCTTTGGTTCCAATACGCAGGAGCCGATT 173
Query 191 AAAGTTTTGTGCTAGAATCTTCTCATCTTACTCTTTTCCTTATAAGAGAAAGAAAATTAG 250
|||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 174 AAAGTTTTGTGCAAGAATTTTCTCGTCTTACTCTTTTCCCTATAAGAGAAAGAAAATTAG 233
Query 251 GGATCTCGATAACACCGAGAAAAATCTTGATATTGACGAAGACAACGATGAGTGGGATTT 310
|||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 234 GGATTTCGATAACACCGAGAAAAATCTTGGTATTGATGAAGACAACGATGAATGGGATTT 293
Query 311 TGATGGAGACGATGATGGTTTAGAGACTGATGATCATCTTTCTTGCTTCAGAGGCTTGGT 370
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 294 TGATGGAGACGATGATGGTTTAGAGACTGATG---ATCTTTCTTGCTTCAGAGGCTTAGT 350
Query 371 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGCCTCGA 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGTCTCGA 410
Query 431 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACGGG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACTGG 470
Query 491 TTCGTTCTACATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 550
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTCATTCTATATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 530
Query 551 AAGAGTGAAAAACTCACTTAGCCGTAAAAATATTTTACTACGAGACGATTATACTTGTCA 610
|||||||||||||||||| || ||||||||||| ||||| ||||||| ||||||||||||
Sbjct 531 AAGAGTGAAAAACTCACTAAGTCGTAAAAATATATTACTGCGAGACGGTTATACTTGTCA 590
Query 611 ATATTGTTCTTCGCGAGAAAATTTGACCATTGATCATGTTATGCCGGTTTCTCGAGGTGG 670
|||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 591 ATATTGTTCTTCCCGTGAAAACTTGACCATTGATCATGTTATGCCAGTTTCTCGAGGTGG 650
Query 671 AGAATGGA-CTTGGCAAAACCTAGTAGCTGCATGTTCAAGATGCAACTCAAGGAAAGGAC 729
|||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 651 AGAATGGAGCT-GGCAAAACCTAGTAGCTGCATGTTCAAGATGTAACTCAAAGAAAGGTC 709
Query 730 AGAAGACAGCAGACGAAGCACACATGAAGTTACTTAAGGTCCCAAAGGAACCAAAAGACT 789
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 710 AGAAGACAGCAGAAGAAGCACACATGAAGTTACTCAAGGTCCCGAAGGAACCAAAAGACT 769
Query 790 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCGAATAAGG 849
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 770 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCAAATAAGG 829
Query 850 GCATGCCAGAAGAATGGCGTCAGTATCTGGCAAAACCTTTATCCGAGACATAGTAGTTTC 909
| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||
Sbjct 830 GAATGCCAGAAGAATGGCGTCAGTATCTGGCGAAACCTTTAACCGAGCCATAGCAGTTTA 889
Query 910 TCTCAGGAATCAAGGAGCAAAAG-GGATAGGTCT-GGCCTTCCTTGTAAACACAAAATCG 967
||||||||||||||||||||||| || | ||| |||| || | ||||| | | || ||
Sbjct 890 TCTCAGGAATCAAGGAGCAAAAGTGG-TCCGTCCAGGCCATC-TCGTAAATATAGAA-CG 946
Query 968 -TGGCCTCG-T---ATCT-TTTCTCCCAATCGTGACTTGTTTTGAGTTGG-ACTCAAATG 1020
|||| ||| | || | ||| || | | | |||||| || |||| | |||||||||
Sbjct 947 GTGGC-TCGATTGCATATGTTTGTC--A-T-G-GACTTGATTAGAGTACGCACTCAAATG 1000
Query 1021 TATATAATACGTAAATAT 1038
||||||||||||||||||
Sbjct 1001 TATATAATACGTAAATAT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5