BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23950.1
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932396 jgi|Araly1|932396|scaffold_400384.1 2981 0.0
> Ahg932396 jgi|Araly1|932396|scaffold_400384.1
Length=1967
Score = 2981 bits (1614), Expect = 0.0
Identities = 1850/1962 (94%), Gaps = 24/1962 (1%)
Strand=Plus/Plus
Query 427 CTAATCTAAAGC-TTTTCATGGTGGTGATGAAGTTAATAACAATGAAG----A------- 474
|||| ||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 4 CTAAACTAAAGCTTTTTCATGGTGGTGATGAAGTTAATAACGATGAAGAAAAATCCTTTT 63
Query 475 TAT-TC-TCT-GTTC-TGTTACTACTATGTTTCTTCGTTACTTGTTCTCTCTCTTCTGAA 530
| | || ||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 64 TTTCTCTTCTCTTTCTTGTTACTACTCTGTTTCTTCGTTACTTGTTCTCTCTCTTCTGAG 123
Query 531 CCCAGAAACCCTGAAGTGGAGGCGTTGATAAACATAAAGAACGAGTTACATGATCCACAT 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 124 CCCAGAAACCCTGAAGTGGAGGCGTTGATAAACATAAAGAACGATTTACATGATCCACAT 183
Query 591 GGTGTTTTCAAAAACTGGGATGAGTTTTCTGTTGATCCTTGTAGCTGGACTATGATCTCT 650
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 184 GGTGTTTTGAACAACTGGGATGAGTTTTCTGTTGATCCTTGTAGTTGGACTATGATCACT 243
Query 651 TGTTCTTCAGACAACCTCGTAATTGGCTTAGGAGCTCCAAGTCAGTCTCTTTCAGGAACT 710
|||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 244 TGTTCTCCAGACAACCTCGTAACTGGCCTAGGAGCTCCAAGTCAGTCTCTTTCAGGAACT 303
Query 711 TTATCTGGGTCTATTGGAAATCTCACTAATCTTCGACAAGTGTCATTACAGAACAATAAC 770
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 304 TTATCTGGGTCTATTGGAAATCTCACTAATCTTCAACAAGTGTTATTACAGAACAATAAC 363
Query 771 ATCTCCGGTAAAATCCCACCGGAGATTTGTTCTCTTCCCAAATTACAGACTCTGGATTTA 830
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 364 ATCTCCGGTAAAATCCCACCGGAGCTTTGTTCTCTTCCCAAATTACAGACTTTGGATTTA 423
Query 831 TCCAATAACCGGTTCTCCGGTGAAATCCCCGGTTCTGTTAACCAGCTGAGTAATCTCCAA 890
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 424 TCCAATAACCGGTTCTCCGGTGAAATCCCCGGTTCGGTTAACCAACTGAGTAATCTCGAA 483
Query 891 TATCTGAGGTTGAACAACAACTCATTATCTGGGCCCTTTCCTGCTTCTCTGTCTCAAATC 950
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 TATCTGAGGTTGAACAACAACTCATTATCTGGGCCCTTTCCTGCTTCTTTGTCTCAAATC 543
Query 951 CCTCACCTCTCTTTCTTAGACTTGTCTTATAACAATCTCAGAGGTCCTGTTCCTAAATTT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 544 CCTCACCTCTCTTTCTTAGACTTGTCTTATAACAATCTCAGAGGTCCTGTTTCTAAATTC 603
Query 1011 CCTGCAAGGACATTCAATGTTGCTGGGAACCCTTTGATTTGTAAAAACAGCCTACCGGAG 1070
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 604 CCTGCAAGGACATTCAATGTTGCTGGGAATCCTTTGATTTGTAAAAACAGCCCACCTGAG 663
Query 1071 ATTTGTTCAGGATCAATCAGTGCAAGCCCTCTTTCTGTCTCTTTACGTTCTTCATCAGGA 1130
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 664 ATTTGTTCAGGATCAATCAATGCAAGTCCTCTTTCTGTCTCTTTACGTTCTTCATCAGGA 723
Query 1131 CGTAGAACCAACATATTAGCAGTTGCACTTGGTGTAAGCCTTGGCTTTGCTGTTAGTGTA 1190
|||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 724 CGTAGAACAAATATATTGGCGGTTGCACTTGGTGTAAGCCTTGGCTTTGCTGTTAGTGTA 783
Query 1191 ATCCTCTCTCTCGGGTTCATTTGGTATCGAAAGAAACAAAGACGGTTAACGATGCTTCGC 1250
||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||||||
Sbjct 784 ATCCTCTCTCTCGGGCTCATTTGGTATCGAAGGAAACAAAAAAGGCTAACGATGCTTCGC 843
Query 1251 ATTAGTGACAAGCAAGAGGAAGGGTTACTTGGGTTGGGAAATCTAAGAAGCTTCACATTC 1310
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 844 ATAAGTGACAAGCAAGAGGAAGGGTTACTAGGATTGGGAAATCTAAGAAGCTTCACATTC 903
Query 1311 AGGGAACTTCATGTAGCTACGGATGGTTTTAGTTCCAAGAGTATTCTTGGTGCTGGTGGG 1370
|| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 904 AGAGAACTTCATGTAGCTACGGATGGTTTTAGTTACAAGAGCATTCTTGGTGCTGGTGGG 963
Query 1371 TTTGGTAATGTCTACAGAGGAAAATTCGGGGATGGGACAGTGGTTGCAGTGAAACGATTG 1430
||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct 964 TTTGGTAATGTCTACAGAGGAAAGCTCGTGGATGGGACAATGGTTGCAGTGAAACGACTG 1023
Query 1431 AAAGATGTGAATGGAACCTCCGGGAACTCACAGTTTCGTACTGAGCTTGAGATGATCAGC 1490
|||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||
Sbjct 1024 AAAGATGTGAATGGAACCTCTGGGAATTCGCAGTTTCGTACCGAGCTTGAGATGATCAGC 1083
Query 1491 TTAGCTGTTCATAGGAATTTGCTTCGGTTAATCGGTTATTGTGCGAGTTCTAGCGAAAGA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1084 TTAGCTGTTCATAGGAATTTGCTTCGGTTAATCGGTTATTGTGCGAGTTCTAGTGAAAGA 1143
Query 1551 CTTCTTGTTTACCCTTACATGTCCAATGGCAGCGTCGCCTCTAGGCTCAAAGCTAAGCCA 1610
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 1144 CTTCTTGTTTACCCTTACATGTCCAATGGCAGTGTCGCCTCTAGACTTAAAGCTAAACCA 1203
Query 1611 GCGTTGGACTGGAACACAAGGAAGAAGATAGCGATTGGAGCTGCAAGAGGGTTGTTTTAT 1670
|| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1204 GCATTGGACTGGAACACAAGGAAGAAGATAGCCATAGGAGCTGCAAGAGGTTTGTTTTAT 1263
Query 1671 CTACACGAGCAATGCGATCCCAAGATTATTCACCGAGATGTCAAGGCAGCAAACATTCTC 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CTACACGAGCAATGCGATCCCAAGATTATTCACCGAGATGTCAAGGCAGCAAACATTCTC 1323
Query 1731 CTAGATGAGTATTTTGAAGCAGTTGTTGGGGATTTTGGACTAGCAAAGCTACTCAACCAC 1790
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTAGATGAGTATTTTGAAGCTGTTGTTGGGGATTTTGGACTAGCAAAGCTACTCAACCAC 1383
Query 1791 GAGGATTCACATGTCACAACCGCGGTTAGAGGAACTGTTGGTCACATTGCACCTGAGTAT 1850
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1384 GAGGATTCACATGTCACAACCGCTGTTAGAGGAACTGTTGGTCACATTGCACCCGAGTAT 1443
Query 1851 CTCTCCACCGGTCAGTCATCTGAGAAAACCGATGTCTTTGGGTTCGGTATACTTTTGCTA 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CTCTCCACCGGTCAGTCATCTGAGAAAACCGATGTCTTTGGGTTCGGTATACTTTTGCTA 1503
Query 1911 GAGCTCATCACAGGAATGAGAGCTCTCGAGTTTGGCAAGTCTGTTAGCCAGAAAGGAGCT 1970
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1504 GAGCTCATCACAGGAATGAGAGCTCTAGAGTTTGGCAAGTCTGTTAGCCAAAAAGGAGCC 1563
Query 1971 ATGCTAGAATGGGTGAGGAAGCTACACAAGGAAATGAAAGTAGAGGAGCTAGTAGACCGA 2030
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1564 ATGCTTGAATGGGTGAGGAAGCTACACAAGGAAATGAAAGTAGAGGAGCTTGTAGACCGG 1623
Query 2031 GAACTGGGGACAACCTACGATAGAATAGAAGTTGGAGAGATGCTACAAGTGGCACTGCTC 2090
||||| ||||||||||||||||||||||| |||||||||||| |||||||||| | |||
Sbjct 1624 GAACTCGGGACAACCTACGATAGAATAGACGTTGGAGAGATGTTACAAGTGGCTTTACTC 1683
Query 2091 TGCACTCAGTTTCTTCCAGCTCACAGACCCAAAATGTCTGAAGTAGTTCAGATGCTTGAA 2150
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1684 TGCACTCAGTTTCTTCCCGCTCACAGACCGAAAATGTCTGAAGTGGTTCAGATGCTTGAA 1743
Query 2151 GGAGATGGATTAGCTGAGAGATGGGCTGCTTCACATGACCATTCACATTTCTACCATGCC 2210
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1744 GGAGATGGATTAGCAGAAAGATGGGCTGCTTCACATGATCATTCACATTTCTACCATGCC 1803
Query 2211 AACATGTCTTACAGGACTATTACCTCTACTGATG-----G-CAACAACCAAACCAAACAT 2264
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1804 AACATGTCTTACAGGACTATTACCTCTACTGATGCTAATGGCAACAACCAAACCAAACAT 1863
Query 2265 CTGTTTGGCTCCTCAGGATTTGAAGATGAAGATGATAATCAAGCGTTAGATTCATTCGCC 2324
||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1864 TTGTTTGGTTCCTCAGGATTTGAAGATGAAGATGAGAATCAAGCCTTAGATTCATTCGCC 1923
Query 2325 ATGGAACTATCTGGTCCAAGGTAGTAAA-TCTTGGACACAGA 2365
|||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1924 ATGGAACTATCTGGTCCAAGGTAGTAAAAT-TTGGACAAAGA 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94578078335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5