BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23980.1
Length=2516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320206 jgi|Araly1|320206|fgenesh1_pm.C_scaffold_4000263 3681 0.0
Ahg328660 jgi|Araly1|328660|fgenesh1_pm.C_scaffold_7000887 1816 0.0
Ahg949896 jgi|Araly1|949896|scaffold_801783.1 231 1e-59
> Ahg320206 jgi|Araly1|320206|fgenesh1_pm.C_scaffold_4000263
Length=2241
Score = 3681 bits (1993), Expect = 0.0
Identities = 2162/2245 (96%), Gaps = 5/2245 (0%)
Strand=Plus/Plus
Query 101 ATGTTCGATACTTGTGGCCCAAAAGGAGTCAAATCTCAAGTCATCAGTGGCCAACGCGAG 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCGATACTTGTGGCCCAAAAGGAGTCAAATCTCAAGTCATCAGTGGCCAACGCGAG 60
Query 161 AACTTTGTGAGGTTAGATAGTATGGACTCAAGGTACTCGCAAAGTTCCGAAACGGGTCTA 220
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 AAGTTTGTGAGGTTAGATAGTATGGACTCGAGGTACTCCCAAAGTTCCGAAACGGGTCTA 120
Query 221 AACAAATGCACATTGAATATACAAGGAGGACCTAAACGTTTTGCTCAAGGAAGCAAAGCA 280
|||||||||||||||||||||| | ||||||||| |||| | |||||||||||||| ||
Sbjct 121 AACAAATGCACATTGAATATAC-A--AGGACCTAATCGTTATACTCAAGGAAGCAAAACA 177
Query 281 TCATCTGGATCTTTTAAGAAAGGGTTTAGAAAAGGATCAGAGGGGCTTTGGTCTATAGGT 340
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 178 TCATCTGGATCTTTTAAGAAAGGTTTTAGAAAAGGATCAGAGGGACTTTGGTCTATAGGT 237
Query 341 CGATCGATTGGACTCGGTGTTTCGCGCGCTGTGTTTCCAGAAGATCTTGAAGTATCAGAG 400
|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 238 AGATCGATTGGGCTCGGTGTTTCGCGTGCTGTGTTTCCAGAAGATCTTGAAGTCTCAGAG 297
Query 401 AAGAAGATATTTGATCCACAAGACAAGTTTCTTTTACTCTGCAACAAGTTGTTCGTCGCT 460
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 AAGAAGATATTTGATCCACAAGACAAGTTTCTTTTACTCTGCAACAAGTTTTTCGTCGCT 357
Query 461 TCGTGTATACTCGCAGTATCCGTTGATCCTCTCTTCTTGTATCTTCC-TTTCATTAATGA 519
||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||
Sbjct 358 TCGTGTATACTCGCAGTATCCGTGGATCCACTCTTCTTGTATCTTCCGTTT-ATTAATGA 416
Query 520 TAAAGCGAAATGTGTTGGTATAGATCGGAAACTGGCTATTATAGTAACTACAATAAGGAC 579
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 417 TAAAGCGAAATGTGTTGGTATAGATCGGAAACTGGCAATCATAGTAACTACAATAAGGAC 476
Query 580 AGTTATAGATTCGTTTTATCTCTTTCATATGGCTCTACGGTTTAGAACAGCTTATGTTGC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGTTATAGATTCGTTTTATCTCTTTCATATGGCTCTACGGTTTAGAACAGCTTATGTTGC 536
Query 640 TCCCTCGTCACGGGTTTTTGGCCGCGGAGAGCTTGTTATAGACCCGGCGCAGATAGCTAA 699
||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 537 TCCCTCGTCACGGGTTTTTGGTCGAGGAGAGCTTGTTATAGACCCTGCACAGATAGCTAA 596
Query 700 GCGGTATCTGCAACAGTATTTCATCATTGATTTACTTTCTGTTCTTCCGGTTCCACAGAT 759
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 GCGGTATCTGCAACAGTATTTCATCATTGATTTACTTTCCGTTCTTCCGGTTCCACAGAT 656
Query 760 TATAGTTTGGAGATTCCTCTATACTTCGAGGGGTGCGAATGTACTGGCGACAAAACAAGC 819
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 TATAGTTTGGAGATTCCTCTATACTTCGAGGGGTGCGAATGTGCTGGCGACAAAACAAGC 716
Query 820 ACTTAGATATATCGTTTTAGTTCAGTATATTCCGCGGTTTCTTCGAATGTATCCTTTAAG 879
||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 717 ACTTAGATATATCGTGCTAGTTCAATATATCCCGCGTTTTCTTCGAATGTATCCTTTAAG 776
Query 880 TTCAGAACTGAAGAGAACTGCCGGGGTATTCGCTGAAACTGCGTGGGCGGGTGCAGCGTA 939
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 777 TTCAGAACTGAAAAGAACAGCCGGGGTCTTCGCTGAAACTGCTTGGGCGGGTGCAGCCTA 836
Query 940 CTACTTGTTGCTTTACATGCTCGCAAGTCATATTGTTGGGGCTTTGTGGTATTTGCTTGC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTACTTGTTGCTTTACATGCTCGCAAGTCATATTGTTGGGGCTTTGTGGTATTTGCTTGC 896
Query 1000 TTTAGAACGCAATAACGACTGTTGGAGTAAGGCTTGCCACAATAACCAGAACTGTACTAG 1059
|||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||
Sbjct 897 CTTAGAACGCAATAATGACTGCTGGAGTAGGGCTTGCAACAATAACCAGAACTGTACCAG 956
Query 1060 AAACTTCTTGTTTTGTGGTAACCAAAATATGAAAGGTTATGCTGCTTGGGACAATATTAA 1119
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 957 AAACTTCTTGTTTTGTGGTAACCAAAATATGCAAGGTTATGCTGCGTGGGACAGTATTAA 1016
Query 1120 AGTTTCGTATCTTCAACTAAAGTGCCCTGTCAATGTCCCCGAAGATGAAGAACCTCCTTT 1179
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1017 AGTTTCGTATCTTCAGCTAAAGTGCCCTGTCAATGTGCCCGAGGATGAAGAACCTCCCTT 1076
Query 1180 TGATTTTGGAATCTACTTAAGAGCACTCTCCTCTGGCATCGTCTCGTCTAAGAACTTTGT 1239
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1077 TGATTTTGGAATCTACTTAAGAGCCCTCTCCTCTGGCATCGTCTCGTCTAGGAACTTTGT 1136
Query 1240 CTCTAAGTACTTCTTCTGTTTGTGGTGGGGACTACAGAATCTTAGTACACTTGGTCAAGG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCTAAGTACTTCTTCTGTTTGTGGTGGGGACTACAGAATCTTAGTACACTTGGTCAAGG 1196
Query 1300 GCTTGAAACCAGCACATATCCTGGAGAGGTTATATTCTCTATAACACTTGCTATTGCTGG 1359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCTTGAAACCAGCACATACCCTGGAGAGGTTATATTCTCTATAACACTTGCTATTGCTGG 1256
Query 1360 ACTTCTACTATTTGCACTTCTCATTGGAAACATGCAGACTTATCTTCAATCGCTTACCAT 1419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ACTTCTACTCTTTGCACTTCTCATTGGAAACATGCAGACTTATCTTCAATCGCTTACCAT 1316
Query 1420 TCGGTTAGAAGAAATGCGAGTAAAAAGACGTGACTCAGAACAGTGGATGCATCATCGAAT 1479
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1317 CCGGTTAGAAGAAATGCGAGTCAAAAGACGTGACTCAGAACAGTGGATGCGTCATCGAAT 1376
Query 1480 GCTTCCACCAGAACTGCGGGAACGGGTTAGACGATATGACCAGTACAAGTGGTTGGAGAC 1539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 GCTTCCACCAGAACTGCGGGAACGGGTTAGACGATATGATCAGTACAAGTGGTTGGAGAC 1436
Query 1540 GCGTGGAGTTGATGAAGAGAATCTTGTTCAGAATCTCCCAAAGGATCTTAGAAGAGATAT 1599
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 GCGTGGCGTTGATGAAGAGAATCTTGTTCAGAACCTCCCAAAGGATCTTAGAAGAGATAT 1496
Query 1600 CAAACGTCATCTCTGTCTCGCGTTAGTCCGAAGAGTTCCATTGTTTGAGAATATGGATGA 1659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CAAACGTCATCTCTGTCTCGCCTTAGTCCGAAGAGTTCCATTGTTTGAGAATATGGATGA 1556
Query 1660 GAGGCTGTTAGATGCAATCTGTGAGAGGCTTAAGCCATGTCTGTTCACTGAGAAGTCGTA 1719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 GAGGCTGCTAGATGCAATCTGTGAGAGGCTTAAGCCATGTCTGTTCACTGAGAAGTCTTA 1616
Query 1720 CTTGGTTCGTGAGGGAGATCCAGTCAACGAGATGCTCTTCATTATCCGTGGTAGGCTCGA 1779
||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||
Sbjct 1617 CTTGGTTCGTGAGGGAGATCCAGTCAATGAAATGCTCTTCATAATTCGTGGTAGGCTCGA 1676
Query 1780 AAGTGTAACCACTGATGGCGGTAGAAGCGGATTCTACAACCGGAGTTTACTTAAAGAAGG 1839
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1677 GAGTGTAACCACTGATGGTGGGAGAAGCGGATTCTACAACCGGAGTTTGCTTAAAGAAGG 1736
Query 1840 AGATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTTGATCCCAAATCCGGTTCTAACCT 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AGATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTTGATCCCAAATCCGGTTCTAACCT 1796
Query 1900 CCCTTCCTCTACAAGAACCGTGAAGGCCTTAACCGAAGTGGAAGCTTTCGCTCTGATAGC 1959
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1797 CCCGTCCTCAACAAGAACCGTGAAGGCCTTAACAGAAGTAGAAGCTTTCGCTCTGATAGC 1856
Query 1960 CGATGAGCTGAAATTCGTGGCAAGCCAGTTCAGGAGACTCCATAGCAGACAAGTACAACA 2019
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1857 CGATGAGCTGAAATTCGTGGCGAGCCAGTTCAGAAGACTCCATAGCAGACAAGTACAACA 1916
Query 2020 CACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCTTGCTTCATGCAAGCAGC 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1917 CACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCTTGCTTCATGCAAGCCGC 1976
Query 2080 ATGGCGACGGTACATAAAGAGGAAGAAATTGGAGCAACTTagaaaagaagaggaagaaga 2139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 ATGGAGACGGTACATAAAGAGGAAGAAATTGGAGCAACTTAGAAAAGAAGAGGAAGAAGA 2036
Query 2140 agaagCGGCAGCAGCATCAGTTATAGCAGGAGGAAGTCCTTATAGCATAAGAGCAACGTT 2199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2037 AGAAGCGGCAGCAGCATCAGTTATAGCAGGAGGAAGTCCGTATAGCATAAGAGCAACGTT 2096
Query 2200 CTTGGCTTCAAAGTTTGCGGCAAATGCACTTCGTAGCGTTCACAAGAACCGGACCGCGAA 2259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2097 CTTGGCTTCAAAGTTTGCGGCAAATGCACTTCGTAGCGTTCACAAGAACCGGACTGCGAA 2156
Query 2260 ATCAACATTGTTGTTGTCATCTACTAAAGAATTGGTGAAATTTCAGAAACCTCCAGAACC 2319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 ATCAACATTGTTGTTGTCATCTACTAAAGAATTGGTGAAATTTCAGAAACCTCCAGAACC 2216
Query 2320 AGATTTCTCTGCTGAAGATCACTGA 2344
|||||||||||||||||||||||||
Sbjct 2217 AGATTTCTCTGCTGAAGATCACTGA 2241
> Ahg328660 jgi|Araly1|328660|fgenesh1_pm.C_scaffold_7000887
Length=2202
Score = 1816 bits (983), Expect = 0.0
Identities = 1714/2061 (83%), Gaps = 74/2061 (4%)
Strand=Plus/Plus
Query 121 AAAAGGAGTCAAATCTCAAGTCATCAGTGGCCAACGCGAGAACTTTGTGAGGTTAGATAG 180
||||| ||| ||||| ||||| ||||||||||| | |||||| ||||| ||||| |||||
Sbjct 18 AAAAGCAGTGAAATCACAAGTAATCAGTGGCCATCTCGAGAAATTTGTAAGGTTGGATAG 77
Query 181 TATGGACTCAAGGTACTCGCAAAGTTCCGAAACGGGTCTAAACAAATGCACAT-TGAATA 239
|||||| || |||||||| || | ||| || | |||||||||| |||||| | | |||
Sbjct 78 TATGGATTCTAGGTACTCTCAGACTTCTGATGCTGGTCTAAACAGATGCAC-TCTCAATC 136
Query 240 TACAAGGAGGACCTAA-ACGT--T--T--TGCTCAAGG-AAGCAAAGCATCATCTGGATC 291
||| | |||||| || |||| | | |||||| || || ||| | || ||||| ||
Sbjct 137 TAC-A--AGGACC-AACACGTGGTGGTGGTGCTCAGGGCAA-CAATGTTTCTTCTGGTTC 191
Query 292 TTTTAAGAAAGGGTTTAGAAAAGGATC-AGAGGGGCTTTGGTCTATAGGTCGATCGATTG 350
||||||||||| ||||||||||| || | | || ||||||||||||||| |||| ||||
Sbjct 192 CTTTAAGAAAGGATTTAGAAAAGGCTCTA-AAGGTCTTTGGTCTATAGGTAGATCAATTG 250
Query 351 GACTCGGTGTTTCGCGCGCTGTGTTTCCAGAAGATCTTGAAGTATCAGAGAAGAAGATAT 410
| | || ||||| || || || ||||| ||||||||| ||||||||||||||||||| |
Sbjct 251 GTTTGGGGGTTTCACGAGCAGTTTTTCCTGAAGATCTTAAAGTATCAGAGAAGAAGATTT 310
Query 411 TTGATCCACAAGACAAGTTTCTTTTACTCTGCAACAAGTTGTTCGTCGCTTCGTGTATAC 470
|||||||||| |||||||||||||| |||||||||||| |||| || |||| || || |
Sbjct 311 TTGATCCACAGGACAAGTTTCTTTTGCTCTGCAACAAGCTGTTTGTTACTTCTTGCATTC 370
Query 471 TCGCAGTATCCGTTGATCCTCTCTTCTTGTATCTTCCTTTCATTAATGATAAAGCGAAAT 530
|||| || || || ||||| |||||||||||||||||||| |||| ||||| | |||||
Sbjct 371 TCGCTGTGTCTGTGGATCCGCTCTTCTTGTATCTTCCTTTTGTTAAGGATAATGAGAAAT 430
Query 531 GTGTTGGTATAGATCGGAAACTGGCTATTATAGTAACTACAATAAGGACAGTTATAGATT 590
|| | |||||||| |||| | ||||||| |||| ||| ||| | ||||||| || |||
Sbjct 431 GTATCGGTATAGACCGGAGATTGGCTATCATAGCAACAACACTGCGGACAGTGATCGATG 490
Query 591 CGTTTTATCTCTTTCATATGGCTCTACGGTTTAGAACAGCTTATGTTGCTCCC-TCGTC- 648
|||||||||| |||||||||||||| |||||||| ||||||| ||| || ||| || ||
Sbjct 491 CGTTTTATCTTTTTCATATGGCTCTTCGGTTTAGGACAGCTTTTGTCGC-CCCTTCTTCT 549
Query 649 ACGGGTTTTTGGCCGCGGAGAGCTTGTTATAGACCCGGCGCAGATAGCTAAGCGGTATCT 708
| |||||||||| || || || ||||| || ||||| || |||||||| || |||||| |
Sbjct 550 A-GGGTTTTTGGGCGAGGCGAACTTGTGATCGACCCTGCACAGATAGCAAAACGGTATTT 608
Query 709 GCAACAGTATTTCATCATTGA-TTTACTTTCTGTTCTTCCGGTTCCACAGATTATAGTTT 767
||| ||||||||||||||||| ||| || ||||| |||||| ||||||||||| ||||||
Sbjct 609 GCAGCAGTATTTCATCATTGACTTT-CTCTCTGTGCTTCCGCTTCCACAGATTGTAGTTT 667
Query 768 GGAGA-TTCCT--CTATACTTCGAGG-GGTGCGAA-TGTACTGGCGACAAAACAAGCACT 822
||||| ||| | | || | || || ||||| || ||| ||||| ||||| | || |
Sbjct 668 GGAGATTTCTTGGC-AT-C-TC-TGGAGGTGC-AAGTGTGCTGGCAACAAAGCGGGC-GT 721
Query 823 T-AGATATATCGTTTTAGTTCAGTATATTCCGCGGTTTC-TTCGAATGTATCCTTTAAGT 880
| ||| ||| ||||| |||| ||||||||| || ||| |||| | |||||||| ||
Sbjct 722 TGCGATCGATCATTTTACTTCAATATATTCCGAGG-TTCATTCGGCTATATCCTTTGAGC 780
Query 881 TCAGAACTGAAGAGAACTGCCGGGGTATTCGCTGAAACTGCGTGGGCGGGTGCAGCGTAC 940
||||| | |||||||| || || || || ||||||||||| ||||| |||||||| ||
Sbjct 781 TCAGAGTTAAAGAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCTGGTGCAGCTTAT 840
Query 941 TACTTGTTGCTTTACATGCTCGCAAGTCATATTGTTGGGGCTTTGTGGTATTTGCTT-GC 999
|||||| | || |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 841 TACTTGCTACTCTACATGCTCGCAAGTCATATTGTTGGGGCTTTATGGTACTT-ATTGGC 899
Query 1000 TTTAGAACGCAATAA-CGACTGTTGGAGTAAGGCTTGC---CACAATAACCAGAACTGTA 1055
||||||||| |||| || || ||||| ||||||||| | |||| || | |||||
Sbjct 900 CTTAGAACGCTATAATGGA-TGCTGGAGCAAGGCTTGCGGTAATAATAGCCTGGACTGT- 957
Query 1056 C-TAGAAACTTCTTGTTTTGTGGTAACCAAAATATGAAAGGTTATGCTGCTTGGGAC-AA 1113
| ||||||||| ||||||||||||| |||||||| | |||||||| |||| || | |
Sbjct 958 CAAAGAAACTTCCTGTTTTGTGGTAATGAAAATATGGATGGTTATGCAGCTT-GGTCTAC 1016
Query 1114 TATTAAAGTTTC-GTATCTTC-AACTAAAGTGCCCTGTCAATGTC-CCCGAAGATGAAGA 1170
|| |||| ||| || ||||| ||| ||| || || || ||| | || ||| | |
Sbjct 1017 CATCAAAGATTCTGT-TCTTCAAAC-AAATTGTCCAGTTAAT-ACAACC---GAT--A-A 1067
Query 1171 ACCTCCTTTTGATTTTGGAATCTACTTAAGAGCACTCTCCTCTGGCATCGTCTCGTCTAA 1230
|||||||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||
Sbjct 1068 TCCTCCTTTTGATTTCGGAATCTACTTAAGAGCCCTGTCCTCTGGCATTGTCTCATCTAA 1127
Query 1231 GAACTTTGTCTCTAAGTACTTCTTCTGTTTGTGGTGGGGACTACAGAATCTTAGTACACT 1290
|| ||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 1128 GAGCTTTGTCTCTAAGTACTTCTTCTGTTTATGGTGGGGACTTCAGAATCTCAGCACTCT 1187
Query 1291 TGGTCAAGGGCTTGAAACCAGCACATATCCTGGAGAGGTTATATTCTCTATAACACTTGC 1350
||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 1188 TGGTCAAGGGCTTCAAACCAGTACATACCCTGGAGAGGTTATATTCTCCATAGCACTTGC 1247
Query 1351 TATTGCTGGACTTCTACTATTTGCACTTCTCATTGGAAACATGCAGACTTATCTTCAATC 1410
||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1248 TATTGCTGGACTTCTTCTCTTTGCTCTTCTTATTGGAAACATGCAGACTTATCTTCAATC 1307
Query 1411 GCTTACCATTCGG-TTAGAAGAAATGCGAGTAAAAAGACGTGACTCAGAACAGTGGATGC 1469
||||| || ||| || ||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1308 CCTTACTATACGGCTT-GAAGAAATGAGAGTGAAAAGACGCGACTCAGAACAGTGGATGC 1366
Query 1470 ATCATCGAATGCTTCCACCAGAACTGCGGGAACGGGTTAGACGATATGACCAGTACAAGT 1529
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1367 GTCATCGAATGCTTCCACCAGAACTGCGGGAACGAGTCAGACGATATGACCAGTACAAAT 1426
Query 1530 GGTTGGAGACGCGTGGAGTTGATGAAGAGAATCTTG-TTCAGAATCTCCCAAAGGATCTT 1588
|||||||||| || ||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1427 GGTTGGAGACACGCGGAGTTGATGAAGAGAA-CTTGGTTCAGAACCTCCCAAAGGATCTG 1485
Query 1589 AGAAGAGATATCAAACGTCATCTCTGTCTCGCGTTAGTCCGAAGAGTTCCATTGTTTGAG 1648
||||||||||||||||| ||||||||||| || || || || || |||||||||||||||
Sbjct 1486 AGAAGAGATATCAAACGCCATCTCTGTCTGGCTTTGGTTCGGAGGGTTCCATTGTTTGAG 1545
Query 1649 AATATGGATGAGAGGCTGTTAGATGCAATCTGTGAGAGGCTT-AAGCCATGTCTGTTCAC 1707
|||||||||||||||||| | |||||||| |||||| || || ||||| ||||||| |||
Sbjct 1546 AATATGGATGAGAGGCTGCTCGATGCAATTTGTGAGCGG-TTGAAGCCGTGTCTGTACAC 1604
Query 1708 TGAGAAG-TCGTACTTGGTTCGTGAGGGAGATCCAGTCAACGAGATGCTCTTCATTATCC 1766
|||| | || || |||||||| || ||||| || || || |||||||||||||||||||
Sbjct 1605 GGAGA-GCTCTTATTTGGTTCGGGAAGGAGACCCGGTTAATGAGATGCTCTTCATTATCC 1663
Query 1767 GTGGTAGGCTCGAAAGTGTAACCACTGATGGCGGTAGAAGCGGATTCTACAACCGGAGTT 1826
||||| |||| || ||||| ||||| |||||||| ||||| || |||| |||||| ||||
Sbjct 1664 GTGGTCGGCTTGAGAGTGTGACCACCGATGGCGGAAGAAGTGGTTTCTTCAACCGCAGTT 1723
Query 1827 TACTTAAAGAAGGAGATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTTGATCCCAAAT 1886
| |||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 1724 TGCTTAAAGAAGGAGATTTCTGTGGGGAAGAGCTTTTGACATGGGCACTTGATCCCAAAT 1783
Query 1887 CCGGTTCTAACCTCCCTTCCTCTACAAGAACCGTGAAGGC-CTTAACCGAAGTGGAAGCT 1945
|||| || ||||| || |||||||| ||||||| ||||| || ||| ||||| || |||
Sbjct 1784 CCGGATCCAACCTACCATCCTCTACCAGAACCGCAAAGGCTCT-AACTGAAGTAGAGGCT 1842
Query 1946 TTCGCTCTGATAGCCGATGAGCTGAAATTCGTGGCAAGCCAGTTCAGGAGACTCCATAGC 2005
|| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || |||
Sbjct 1843 TTTGCTTTGATAGCCGATGAGCTTAAATTTGTGGCTAGCCAGTTCAGGAGACTACACAGC 1902
Query 2006 AGACAAGTACAACACACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCT-TG 2064
|| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||| ||| |
Sbjct 1903 AGGCAAGTTCAACACACATTCAGATTCTACTCACAACAATGGAGGACTTGGGCTGCTATT 1962
Query 2065 CTTCATGCAAGCAGCATGGCGACGGTACATAAAGAGGAAGAAA-TTGGAGCAACTTagaa 2123
||||| ||||| ||||||||||| || | |||| ||||||| ||| ||||||| || |
Sbjct 1963 -TTCATACAAGCGGCATGGCGACGATATGTGAAGAAGAAGAAACTTG-AGCAACTCAGGA 2020
Query 2124 aagaagaggaagaagaagaag 2144
||||||| ||||||| |||||
Sbjct 2021 AAGAAGAAGAAGAAGGAGAAG 2041
> Ahg949896 jgi|Araly1|949896|scaffold_801783.1
Length=2192
Score = 231 bits (125), Expect = 1e-59
Identities = 554/753 (74%), Gaps = 62/753 (8%)
Strand=Plus/Plus
Query 1382 ATTGGAAACATGCAGACTTATCTTCAATCG-CTTACCATTCGGTTAGAAGAAATGCGAGT 1440
||||| ||||||||||| ||||| |||||| | |||| |||| || || ||| ||||
Sbjct 1219 ATTGGGAACATGCAGACGTATCTGCAATCGAC-GACCACAAGGTTGGAGGAGATGAGAGT 1277
Query 1441 AAAAAGACGTGACTCAGAACAGTGGATG-CATCATCGAATGCTTCCAC-CAGAAC-TGCG 1497
||| ||| | ||| ||||||| |||||| | ||| || ||| ||| | ||||| || |
Sbjct 1278 AAAGAGAAGAGACGCAGAACAATGGATGTC-TCACCGTTTGC-TCC-CTGAGAACTTGAG 1334
Query 1498 GGAACGGGTTAGACGATATGACCAGTACAAGTGGTTGGAGACGCGTGGAGTTGATGAAGA 1557
|| | | | || || || |||||||| ||| ||||| | || ||||| |||||
Sbjct 1335 AAAAAGAATCCGGCGGTACGAGCAGTACAAATGGCAAGAGACAAGAGGCGTTGACGAAGA 1394
Query 1558 GAATCTTGTTCAG-AATC-TCCCAAAGGATCTTAGAAGAGATATCAAACGTCATCTCTGT 1615
||||||| | || |||| ||||||| ||||||||| | || ||||||||||||||||||
Sbjct 1395 GAATCTT-CTGAGTAATCTTCCCAAA-GATCTTAGACGCGACATCAAACGTCATCTCTGT 1452
Query 1616 CTCG-CGTTAGTC-CGAAGAGTTCC-ATTGTTTGAGAATATGGATG-AGAGGC-TGTTAG 1670
|||| | || || | | || || | |||||||||| ||||| | | | || | || |
Sbjct 1453 CTCGCCCTT-CTCATG-CGGGTCCCGA-TGTTTGAGAAGATGGACGAACA-GCTTCTT-G 1507
Query 1671 ATGCAATCTGTGAGAGGCTT--AAGCCATGT-CTGTTCACTGA-G-AAGTCGTACTTGGT 1725
|||| ||||||| | || || || ||| | | ||| || | ||| | ||| | ||
Sbjct 1508 ATGCTCTCTGTGA-CCGTTTGCAA-CC-TGTGTTATACACAGAGGAAAG-C-TACATAGT 1562
Query 1726 TCGTGAGGGAGATCCAGTCA-ACGAGATGCTCTTCATTATCCGTGGTAGGC-TCGAAAGT 1783
| || |||||||| || | |||| |||||||| ||||| ||||| | || || ||
Sbjct 1563 AAGAGAAGGAGATCCGGT-AGACGAAATGCTCTTTATTATGCGTGGGAAGCTTC-TAACA 1620
Query 1784 GTAACCACTGATGGCGGTAGAAGCGGATTCTACAA--CCGGAGTTTACTTAAAGAAGGAG 1841
| || || |||| || |||| ||| || | ||| || |||| | ||| || || |
Sbjct 1621 ATCACAACAAATGGTGGAAGAACCGGTTTTTTCAATTCC-GAGTAT-CTTGGAGCCGGTG 1678
Query 1842 ATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTT-GATCC-CA-A-ATCCGGTTCTAAC 1897
||||||||||||| |||||||| || ||||| || || || || | |||| || |||
Sbjct 1679 ATTTCTGCGGTGAGGAGCTTTTAACCTGGGC-TTTAGACCCACACACATCC---TCAAAC 1734
Query 1898 CTCCC-TTCCTCTACAAGAACCG-T-GAAGGCCT-TAACCGAAGTGGAAGCTTTCGCTCT 1953
||||| | ||| |||||||| | | | | | || | | ||||| ||||||||||| ||
Sbjct 1735 CTCCCAAT-CTCAACAAGAACTGTTCG-A-G-CTCTCATGGAAGTCGAAGCTTTCGCACT 1790
Query 1954 GATAGCCGATGAGCTGAAATTCGTGGCAAGCCAGTTCAGGA-GACTCCATAGCAGACAAG 2012
| ||| ||||| || ||||| |||||| |||||||| || | || || |||| || ||
Sbjct 1791 TAAAGCTGATGACCTCAAATTTGTGGCATCCCAGTTCA-GACGTCTTCACAGCAAAC-AG 1848
Query 2013 -TACA-ACACACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCTTGCTTCAT 2070
|| | ||| || ||||| ||||| || || |||||||||||||||||||||||||||||
Sbjct 1849 CTA-AGACATACTTTCAGGTTCTACTCGCAACAATGGAGGACTTGGGCCGCTTGCTTCAT 1907
Query 2071 GCAAGCAGCATGGCGACGGTACATAAAGAGGAA 2103
||||| || ||| || | ||||| |||| |||
Sbjct 1908 ACAAGCCGCTTGGAGAAGATACATTAAGAAGAA 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94844710050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5