BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24060.1 Length=1180 Score E Sequences producing significant alignments: (Bits) Value Ahg481264 jgi|Araly1|481264|fgenesh2_kg.4__324__AT2G24060.1 1291 0.0 > Ahg481264 jgi|Araly1|481264|fgenesh2_kg.4__324__AT2G24060.1 Length=1085 Score = 1291 bits (699), Expect = 0.0 Identities = 852/922 (92%), Gaps = 26/922 (3%) Strand=Plus/Plus Query 15 TTCTGGATAAGAGCTTCGTGATGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 74 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCTGGATAAGAGCTTCGCGAAGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 60 Query 75 GGGATTACCAGCAGCACCGTTGGATTCAACGCCGTCTTCACCGGAATAACCAAAACAGTA 134 ||||||| | ||||||||| |||||||||||||| ||| ||||||| |||||||||||| Sbjct 61 GGGATTA-C--CAGCACCGTCGGATTCAACGCCGTTTTCGCCGGAATCACCAAAACAGTA 117 Query 135 TCATCACATTCACTCTTCTCTGTTGATTCCAAACTCTGTAGTCTTCGTCTCTCCAAAACC 194 |||||||||||||| ||| | || ||||||||||||||| | |||||||||||||||||| Sbjct 118 TCATCACATTCACTATTCGCCGTCGATTCCAAACTCTGTGGACTTCGTCTCTCCAAAACC 177 Query 195 GAACTGTCTTTCACTAATCTCACTCCTTCTCCTCGCCGT-GCTTTCGCCGTCACTTGCCG 253 ||||| || ||| | |||||||||||| ||||||||||| || ||| ||||||||||||| Sbjct 178 GAACTTTCCTTCGCAAATCTCACTCCTACTCCTCGCCGTGGC-TTCACCGTCACTTGCCG 236 Query 254 CTTCGGC------GGTGGTGGT---GGAGGTTATCGATTCTCTGGAGACAATAGAAGAGG 304 ||||||| ||||||||| ||||||||||| ||||||||||| |||| |||| Sbjct 237 CTTCGGCGGTGGTGGTGGTGGTGGCGGAGGTTATCGTTTCTCTGGAGATTCTAGACGAGG 296 Query 305 TAGGCCGAAAGAAGCTGAAATTGATGAAGCTCTTGATATCTCCTCAATTAGGTCAGCTAC 364 |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 297 TAGGCCTAAAGAAGCCGAAATTGATGAAGCGCTTGATATCTCCTCAATTAGGTCAGCTAC 356 Query 365 TGTTAGGCTTATCGATGGGCAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 424 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TGTTAGGCTTATCGATGGACAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 416 Query 425 TCGAATGGCTGATGATGCTGAACTTGATCTGGTTATACTATCGCCTGATGCAGATCCTCC 484 ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 417 TCGAATGGCTGATGATGCTGAGCTTGATCTGGTGATATTATCGCCTGATGCAGATCCTCC 476 Query 485 GGTTGTTAAAATGATGGACTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 544 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GGTTGTTAAAATGATGGATTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 536 Query 545 TCAGCAAAAGAAAACAACTCGCATGGATTTAAAGGAGCTTAAAATGGGTTATAATATTGA 604 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 537 TCAGCAAAAGAAAACCACTCGCATGGACTTAAAGGAGCTTAAAATGGGTTACAACATTGA 596 Query 605 TCAGCATGATTATTCCGTTC-GTCTAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 663 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 597 TCAGCATGATTATTCCGTTCGGT-TAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 655 Query 664 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 715 Query 724 AACTCCTCAGACGTTTCCAAACCGAAATAGGGGAGCTTGCAACTGAAGAGAGCAAAAACT 783 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 716 AACTCCTCAGACGTTTTCAAACCGAAATAGGGGAGCTTGCGACTGAAGAGAGCAAAAACT 775 Query 784 TCAGGGACAGAAA-TATGTTCATTATCTTGGTCCCAAACAAAGAAATGATTCGGAAACCA 842 ||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||| Sbjct 776 TCAGGGACAGAAACT-TGTTCATTATCTTGGTACCAAACAAGGAAATGATTCGGAAACCA 834 Query 843 CAAGAACCACCCACAAGAAAGAAGaaaaaaaCAG-CGGAAAACGAAGCTTCAGCTTCAGC 901 ||||||||| || ||||||||||||||||| || |||||||||||| ||||| || || Sbjct 835 CAAGAACCAGCCTCAAGAAAGAAGAAAAAA-CAATCGGAAAACGAAGTTTCAG-TT--GC 890 Query 902 TGCAGAAATAACagctgagcct 923 ||||||||| ||||||||| Sbjct 891 ---AGAAATAACGGCTGAGCCT 909 Score = 276 bits (149), Expect = 3e-73 Identities = 173/184 (94%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 984 gagcctCTACAGATCGATTCTTGAGTTTAAAATCTTGTGGT-AGGATTTTCAGAGCTAAA 1042 |||||||| || ||||| ||| |||||| ||||||| |||| |||||||| ||||||||| Sbjct 904 GAGCCTCTGCAAATCGAGTCTGGAGTTT-AAATCTTATGGTAAGGATTTTGAGAGCTAAA 962 Query 1043 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGCCAAGAGCTGTATAACA 1102 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 963 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGTCAAGAGCTGTATAACA 1022 Query 1103 AATAGAGTTAGTCCTATTTGAATGATGTTCTTCGTTTGTAGATCTTTTCTCTAATCTAtt 1162 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1023 AATAGAATTAGTCCTATTTGAATGATGTTCTTC-TTTGTAGATCTTTTCTCTAATCTATT 1081 Query 1163 tttt 1166 |||| Sbjct 1082 TTTT 1085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44031969135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5