BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24090.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481266 jgi|Araly1|481266|fgenesh2_kg.4__326__AT2G24090.1 1042 0.0
Ahg932212 jgi|Araly1|932212|scaffold_400200.1 150 1e-35
Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969 128 5e-29
> Ahg481266 jgi|Araly1|481266|fgenesh2_kg.4__326__AT2G24090.1
Length=714
Score = 1042 bits (564), Expect = 0.0
Identities = 668/717 (93%), Gaps = 11/717 (2%)
Strand=Plus/Plus
Query 1 ATCTTCTTCATCATCTCTTTCCTCAATCGGAGTGAGCGCaaaaaat-caaaaaTTCGCCG 59
||||||||||||||||| |||||||||||||||||| ||||| || |||||| ||||||
Sbjct 1 ATCTTCTTCATCATCTC-TTCCTCAATCGGAGTGAGTACAAAAGATCCAAAAAATCGCCG 59
Query 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119
Query 120 CCTTTACGCTCTTCTTCTCCAAAGGTCTCACTTCGCAGTTCCGTTCATTTCGCGACGAGT 179
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 120 CCTTTACGCTCTTCTTCTCCAAAGGTTTCACTTCGCAGTTCCGTTCAATTCGCGACGAGT 179
Query 180 CTTTCCTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTGCCTCTGAAGATTTCTACA 239
||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 180 CTTGCTTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTTCCTCAGAAGATTTCTACA 239
Query 240 GTTGCTTCCCCCAATTCTCAAAAGCTTCATTCTTTTACCGTTTTCGCTCATAAGGGCTAC 299
|||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||
Sbjct 240 GTTGCTTCTCCCAATTCCCAAAAGTTTCAGTCTTTTACCGTTTTCGCTCATAAGGGTTAC 299
Query 300 AAGAT-GAAGACCCACAAGGCCTCAGCGAAGCGGTTCAGAGTGACGGGTAGAGGGAAGAT 358
|| || |||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 300 AA-ATTGAAGACCCACAAGGCCTCAGCGAAGCGGTTTAGGGTGACGGGTAGGGGGAAGAT 358
Query 359 TGTGAGGAGGAGATCTGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTGAGGAGGAGATCCGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418
Query 419 ACGTCTATCGAAAATGACGGAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCT 478
||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 419 GCGTTTATCGAAAATGACCGAAGTGAACCGGAGCGACTATGACAATGTGATCGGCGCTCT 478
Query 479 GCCCTACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAGCAGGCTTGATCCTTTTCTTA 538
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 479 ACCATACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAATAAGCTTGATCCTTTTCTTA 538
Query 539 CCTGCAATTCTCATTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTGCAATTCTCGTTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598
Query 599 TTTGGTCAATGAGTTGATTTTTGTTTCATATTTGTGTCTTCTTTTTCTTGTCTCGCATGA 658
|||| |||||||||||||||| ||||| ||||||||||| || || ||||||||||||||
Sbjct 599 TTTGATCAATGAGTTGATTTT-GTTTCTTATTTGTGTCTCCTCTTGCTTGTCTCGCATGA 657
Query 659 CA-ACTATTC-----TAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 709
|| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGACAAAACAAGGCTAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 714
> Ahg932212 jgi|Araly1|932212|scaffold_400200.1
Length=202
Score = 150 bits (81), Expect = 1e-35
Identities = 88/91 (97%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 316 AGGCCTCAGCGAAGCGGTTCAGAGTGACGGGTAGAGGGAAGATTGTGAGGAGGAGATCTG 375
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 90 AGGCCTCAGCGAAGCGGTTCAGGGTGACGGGTAG-GGGAAGATTGTGAGGAGGAGATCCG 32
Query 376 GAAAGCAGCATTTGTTAGCTAAGAAGAACAA 406
|||||||||||||||||||||||||||||||
Sbjct 31 GAAAGCAGCATTTGTTAGCTAAGAAGAACAA 1
> Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969
Length=195
Score = 128 bits (69), Expect = 5e-29
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 438 GAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCTGCCCTACTTGAAAGTCAAT 497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCTACCCTACTTGAAAGTCAAT 180
Query 498 CGAAAGGCGACTTAA 512
|||||||| ||||||
Sbjct 181 CGAAAGGCAACTTAA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5