BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24100.1 Length=1640 Score E Sequences producing significant alignments: (Bits) Value Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1 2386 0.0 Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1 484 6e-136 > Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1 Length=1607 Score = 2386 bits (1292), Expect = 0.0 Identities = 1470/1553 (95%), Gaps = 24/1553 (2%) Strand=Plus/Plus Query 93 AACAATTTTCCGGTGAAGTTAGAGATCATTGAAGATTCTCTTGAAGAAGAACACGCTCCT 152 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 66 AACAATTTTCCGGTGAAGTTAGAGATCGTTGAAGATTTTCTTGAAGAAGAACACGCTCCT 125 Query 153 CTCAACAAACGATCCAAGCTATGGAG---CAATGGAACAAGTGTCTCTAAGTTTAGTCTA 209 |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 126 CTCAACAAACGATCAAAGATATGGAGCAACAATGGAACAAGTGTCTCTAAGTTTAGTCTA 185 Query 210 CTTGAAGAGCCAAGTCCTTTGGGGTTGAGTTTAAAAAAGAGCCCATCTTTTCAAGAACTG 269 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 186 CTTGAAGAGCCAAGTCCTTTGGGTTTGAGTTTAAAGAAGAGCCCATCTTTTCAAGAACTG 245 Query 270 ATTGAGATGAAACTTTCTCAAAGTGGTGATGACTCAAATTCGGTTAAGAAAGAAAGTTTT 329 ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 246 ATTCAGATGAAACTTTCTCAAAGTGGTGATGACACAAAGTCGGTTAAGAAAGAAAGTTTT 305 Query 330 GGTTTTGGTGGTGTAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATT 389 || ||| |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 306 GG-TTT--TGGTATAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTT 362 Query 390 CTCAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 449 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 CTTAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 422 Query 450 TACTTTGCAAAACATAAACTTGTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 509 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 423 TATTTTGCAAAGCATAAACTTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 482 Query 510 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTGCCAGAGGATGAACCTGGA 569 ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| Sbjct 483 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTATCGGAAGATGAACCTGGA 542 Query 570 ACCCTGACTATTGTGCTGGCTAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCT 629 || |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 543 ACGCTGACTATCGTGCTGGCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCT 602 Query 630 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAAC 689 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 603 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAAC 662 Query 690 AGGCAACATTTTCTGCAGTGTCCCCCAGGGATTA-TGAACAAACATTTTGAGAAGCTTGT 748 ||||||||||||||||||||| ||||||||| || |||| |||||||| ||||||||||| Sbjct 663 AGGCAACATTTTCTGCAGTGTGCCCCAGGGA-TATTGAATAAACATTTCGAGAAGCTTGT 721 Query 749 TCAATGTGATCATCGCTTGTTCTGTCTAAGCCGGCAGCCAGAGATAAACTTGGCCGCACC 808 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 722 CCAATGTGATCATCGCTTGTTCTGTCTAAGCCGACAGCCAGAGATAAATTTGGCATCACC 781 Query 809 GTTCTTTGATTCACGACTATCTATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 868 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 782 GTTCTTTGATTCACGACAATCAATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 841 Query 869 TGCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGTCTCTATCTCATGACGCACT 928 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 842 TGCATCTCCTGTTGGGGCTCAGTCGTCATCAGAACATGTGTCTCTATCTCATGACGCACT 901 Query 929 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATCGAAGGAGTTGGTGGTTCCATTGATTC 988 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 902 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATTGAAGGAGTTGGTGGTTCCGTTGATTC 961 Query 989 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAATCTATCTCGAT 1048 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 962 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAGTCTATCTCGAT 1021 Query 1049 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAGTTTGAGGA 1108 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1022 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAATTTGAGGA 1081 Query 1109 AATGAAACAGTTACTGCTAAGTGACAACACTCAAACCGATCCATCTGATGAGAAGTCTGT 1168 |||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1082 AATGAAACAGATACTGCTAAGTG---ACACTCAAACCGATCCATCGGATGAGAAGTCTGT 1138 Query 1169 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAACTCACAGCTCAA 1228 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1139 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAATTCACATCTCAA 1198 Query 1229 TATCGAAACTGCTGATACC-G-AAAGAGTTGTTGGGGTCGATAAC-A-A-TAGACACATG 1283 |||||||| |||||| ||| | |||||| |||||||||||||| | | |||||||||| Sbjct 1199 TATCGAAAATGCTGACACCGGTAAAGAG--ATTGGGGTCGATAACAATAGTAGACACATG 1256 Query 1284 CCCGAAGGAGGCAAAAGAGTTGTTGACCCTGCTTCAAGCAGCAAGCCACTACAAGGGATG 1343 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1257 ACCGAAGGAGGCAAAAGAGTTGTTGATCCTGCTTCAAGCAGCAAGCCACTACAGGGGATG 1316 Query 1344 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTGCACCTTCCTCGAATCACATCACTCCCA 1403 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 1317 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTACACCTTCCTCGGATCACATCCCTCCCA 1376 Query 1404 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1436 Query 1464 CTAGGAATCTTGAACAAGTAGCTGTAAATCAAATTATCTCTCT--C--GTTCTTAAGGAT 1519 |||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||| Sbjct 1437 CTAGGAATCTTGAACAAGTAGCTGTAAATCGAATTATCTCTCTAGCTCGTTCATAAGGAT 1496 Query 1520 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1556 Query 1580 TTTCTAAAAGCCATTTCtttttttGAAACATTAACAAAACTTTATTATTGCTT 1632 |||||||||||||||| | |||| || ||||||||||||||||| |||||||| Sbjct 1557 TTTCTAAAAGCCATTT-TGTTTT-GAGACATTAACAAAACTTTAATATTGCTT 1607 Score = 100 bits (54), Expect = 3e-20 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 1 ACTCTCTTAGATTCTCAGGGTTTTGTG-TTTTTTGGATGGTGGAGATGATGAGATCAGAG 59 ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1 ACTCTCTTAGATTCTCAGGGTTTTGTGATTTTTT-CATGGTGGAGATGATGAGATCAGAG 59 Query 60 AATC 63 |||| Sbjct 60 AATC 63 > Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1 Length=2111 Score = 484 bits (262), Expect = 6e-136 Identities = 420/497 (85%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 352 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATTCTCAGGATTGGTCAATGGGAGT 411 |||||||||| |||||||| |||||||||||| | || | | ||| || || ||||||| Sbjct 532 TTGAGAAGCTGAAAGCTTCCAACTTTCCTGCTTCGCTTTTGAAGATCGGACAGTGGGAGT 591 Query 412 ATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTACTTTGCAAAACATAAACTT 470 |||| || ||||||||||||||||||||||| ||| ||||||||||||||||| |||||| Sbjct 592 ATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCAAAACACAAACTT 650 Query 471 GTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATATT 530 || |||||||| |||||||||||||||||||| || || ||||| || ||||| |||||| Sbjct 651 GTTTGGGAAGTATTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAATGGTCAGATATT 710 Query 531 ATGGCTTTGAAGGCTAATTTG-CCAGAGGATGAACCTGGAACCCTGACTATTGTGCTGGC 589 |||||||||||||| || || || || || | ||||||||| ||||| | ||||| || Sbjct 711 ATGGCTTTGAAGGC-AAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGC 769 Query 590 TAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGGCA 649 ||| | ||| || |||||| | ||||| || || |||||||||||||||||||||||||| Sbjct 770 TAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAACATACTTTGTGGCA 829 Query 650 GGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAACAGGCAACATTTTCTGCAGTG 709 ||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| || Sbjct 830 GGCGACATCAGATTTTACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATG 889 Query 710 TCCCCCAGGGATTATGAACAAACATTTTGAGAAGCTTGTTCAATGTGATCATCG-CTTGT 768 | | | |||||| ||||||||||||||||| ||||| ||||||||||||||||| || || Sbjct 890 TGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT-GT 948 Query 769 TCTGTCTAAGCCGGCAGCCAGAGATAAACT-TGGCCGCACCGTTCTTTGATTCACGACTA 827 || ||||||||| ||||| |||||| || | | | | || | ||||||| | || | | Sbjct 949 TCCATCTAAGCCGACAGCCGGAGATAG-CTATTGACTCTCCCTACTTTGATGCGCGGCAA 1007 Query 828 TCTATATTTGAGGATCC 844 ||||| ||||||||||| Sbjct 1008 TCTATTTTTGAGGATCC 1024 Score = 145 bits (78), Expect = 1e-33 Identities = 178/223 (80%), Gaps = 20/223 (9%) Strand=Plus/Plus Query 852 TCT-GGATCTCATAATATT-GCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGT 909 ||| ||| |||| ||| || ||||||||||||||||||||||||||||| || ||| ||| Sbjct 1083 TCTGGGA-CTCAGAAT-TTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGAGCATATGT 1140 Query 910 CTCTATCTCATGACGCACTATCGCCTAGCTCAGTGATGGATGCTCGTGCAA-TCGAAGGA 968 ||| |||||||| |||| ||| || ||||||||||| ||||||||||||| | |||||| Sbjct 1141 ATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAAT-GAAGGA 1199 Query 969 GTTGGTGGTTC-----CATTGA-TTCGAGGAATACA-AACGG-TTG-GAGTCAGATAAAA 1019 |||| ||||| || | | ||| || || ||| ||| | ||| | ||||||| || Sbjct 1200 ATTGGAGGTTCTGAAGCAGTCAATTCAAG-AA-ACAGAACAGATTGTG-GTCAGATCGAA 1256 Query 1020 ATGCCTGGACTACACCAATCTATCTCGA-TGAACGATTTCCTT 1061 |||||||||||||||||||| || | ||| ||||||||| Sbjct 1257 GCACCTGGACTACACCAATCTATGTC-ACTGAGTGATTTCCTT 1298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61477655430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5