BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24220.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343982 jgi|Araly1|343982|fgenesh1_pg.C_scaffold_4000324 1735 0.0
Ahg932452 jgi|Araly1|932452|scaffold_400440.1 381 7e-105
> Ahg343982 jgi|Araly1|343982|fgenesh1_pg.C_scaffold_4000324
Length=1137
Score = 1735 bits (939), Expect = 0.0
Identities = 1068/1131 (94%), Gaps = 6/1131 (1%)
Strand=Plus/Plus
Query 24 ATGACAACTTTCAAAGACGATAATCCTCAGTCAAA-TT-T-A-TCAGACTACTAATGGAT 79
||||||| |||||||||||||||||| |||||||| || | | |||||||||||||||||
Sbjct 1 ATGACAAGTTTCAAAGACGATAATCCCCAGTCAAATTTATCAGTCAGACTACTAATGGAT 60
Query 80 GAAACAACAGAACGCCCAACTGTTTCGTTTTCATATTCAAATTGGATATCAAACATCAAA 139
|||||||||||||||||| ||||||| |||||||||||||||||||| || || ||||
Sbjct 61 GAAACAACAGAACGCCCATCTGTTTCATTTTCATATTCAAATTGGATGTCTAATGTCAAG 120
Query 140 AAATCAACACGAGAAGCTTACGAAGCAAAGCCCTTTTCACATTGGATTCTTTTGTTCTTC 199
||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 121 AAATCGACACGAGAAGCTTACGAAGCAAAGCCCTTTTCACATTGGATACTCTTGCTCTTC 180
Query 200 AGTGGTGCGGCAATGCTCATAGCTTTCCCAGCTTCTAGTCTACTCTCTCGTCTTTACTTC 259
||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 181 AGTGGTGCGGCAATGCTCATAGCTTTCCCGGCTTCTAGTTTACTGTCTCGTCTTTACTTT 240
Query 260 TCCAATGGTGGTAAAAGCAAATGGATCATTTCTTGGGTTGCTGTTGCTGGATGGCCAATC 319
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 241 TCCAATGGTGGTAAAAGTAAATGGATAATCTCTTGGGTTGCTGTTGCTGGATGGCCAATC 300
Query 320 ACTTGTCTTATTTTACTTCCTACATATATCTTTCAAAAGATCAAACCAACACCTCTCAAT 379
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 301 ACTTGTCTCATTTTACTTCCTACATATATCTTTCAAAAGATTAAACCAACACCCCTCAAT 360
Query 380 ACAAAGCTTGTTCTCTCTTATGTTGTGCTCGGTTTCTTGAGTGCTGCAGACAACCTTATG 439
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 361 GCAAAGCTTGTTCTCTCTTATGTCGTGCTTGGTTTCTTGAGTGCTGCAGATAACCTTATG 420
Query 440 TATGCTTATGCCTATGCGTACCTCCCTGCTTCGACTTCTTCTCTTCTGGCTTCTTCGTCG 499
|||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 421 TATGCTTATGCCTACGCGTATCTCCCTGCATCGACTTCTTCTCTACTAGCATCTTCGTCG 480
Query 500 CTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTGTTAAAAACCCGCTGAATGCTTCGGTT 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTGTTAAAAACCCGCTGAATGCTTCAGTT 540
Query 560 ATCAACTCCATCGTGGTTATAACCGGTGCTATGGCTATAATAGCGCTGGATTCAAGCTCT 619
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCAACTCCATTGTGATAATAACCGGTGCTATGGCTATAATAGCGCTGGATTCAAGCTCT 600
Query 620 GATCGGTACAGTTATATAAGCAACAGTCAATACTTTGCAGGTTTCTTTTGGGACATAATG 679
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 601 GATCGGTATAGTTATATAAGCAACAGCCAATATTTTGCAGGTTTCTTTTGGGACATAATG 660
Query 680 GGATCTGCGCTTCACGGGCTCATTTTCGCGTTATCTGAGCTTCTCTTTGTGAAATTGCTT 739
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 661 GGATCTGCGCTTCACGGGCTCATTTTCGCGTTATCCGAGCTTCTCTTTGTGAAACTGCTT 720
Query 740 GGAAGAAGGTCTTTTCACGTTGCTTTGGAGCAGCAAGTCATGGTTTCTCTCACAGCTTTT 799
||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 721 GGAAGAAGGTCCTTTCATGTTGCTTTGGAGCAGCAAGTCATGGTTTCGCTCATAGCTTTC 780
Query 800 GCGTTTACCACTATTGGGATGGTTGTGAGCAATGATTTCCAAGGGATGAGTCACGAAGCT 859
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 781 GCGTTTACCACTCTTGGGATGGTTGTGAGCAACGATTTCCAAGGGATGAGTCAGGAAGCT 840
Query 860 AAGAGTTTCAAAGGCGGTGAGTCTCTGTACACTCAGGTTCTTGTCTGGAGTGCAGTCACG 919
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAGTTTCAAAGGTGGCGAGTCTCTGTACACTCAGGTTCTTGTCTGGAGTGCAGTCACG 900
Query 920 TTTCAACTGGGTGTTCTTGGGGCGACCGCGGTCTTGTTTCTGGCATCCACAGTCATGGCT 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTCAACTGGGTGTTCTTGGGGCGACCGCGGTCTTGTTTCTGGCATCCACAGTCATGGCA 960
Query 980 GGAGTCCTTAACGCTGTGAGAGTTCCCATCACGAGCGTAGCCGCTGTTATATTGATGCAT 1039
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 GGAGTCCTTAACGCCGTGAGAGTTCCCATCACGAGCATAGCCGCTGTTATATTGATGCAT 1020
Query 1040 GATCCAATGAGTGGCTTCAAAATCCTGTCTTTGGTT-TTGACGTTCTGGGGATTCAGCTC 1098
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1021 GATCCAATGAGTGGCTTCAAAATCCTGTCTTTGGTCCTT-ACGTTCTGGGGATTCAGCTC 1079
Query 1099 TTATATCTACGGGAGCTCGAGCTCGAACTCAAGTACTCAAGCTTCCTCTTC 1149
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TTATATCTACGGGAGCTCGAGCTCAAACTCAAGTACTCAAGCTTCCTCTTC 1130
> Ahg932452 jgi|Araly1|932452|scaffold_400440.1
Length=382
Score = 381 bits (206), Expect = 7e-105
Identities = 253/275 (92%), Gaps = 5/275 (2%)
Strand=Plus/Plus
Query 419 AGTGCTGCAGACAA-CCT-TATG--TATG-CTTATGCCTATGCGTACCTCCCTGCTTCGA 473
||||||||||| || | | |||| |||| ||||| |||||||||||||||||| ||||
Sbjct 1 AGTGCTGCAGATAATCTTATATGCTTATGAGTTATGACTATGCGTACCTCCCTGCATCGA 60
Query 474 CTTCTTCTCTTCTGGCTTCTTCGTCGCTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTG 533
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTTCTCTTTTGGCATCTTCGTCGCTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTG 120
Query 534 TTAAAAACCCGCTGAATGCTTCGGTTATCAACTCCATCGTGGTTATAACCGGTGCTATGG 593
|||||| ||||||||||||||| |||||||||||||| ||| | |||||||||| |||||
Sbjct 121 TTAAAACCCCGCTGAATGCTTCAGTTATCAACTCCATTGTGATAATAACCGGTGTTATGG 180
Query 594 CTATAATAGCGCTGGATTCAAGCTCTGATCGGTACAGTTATATAAGCAACAGTCAATACT 653
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 181 CTATAATAGCACTGGATTCAAGCTCTGATCGGTACAGTTATATAAGCAACAGCCAATATT 240
Query 654 TTGCAGGTTTCTTTTGGGACATAATGGGATCTGCG 688
||||||||| |||||||||||||||||||||||||
Sbjct 241 TTGCAGGTTCCTTTTGGGACATAATGGGATCTGCG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5