BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24270.4
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481283 jgi|Araly1|481283|fgenesh2_kg.4__343__AT2G24270.1 2468 0.0
> Ahg481283 jgi|Araly1|481283|fgenesh2_kg.4__343__AT2G24270.1
Length=2031
Score = 2468 bits (1336), Expect = 0.0
Identities = 1449/1505 (96%), Gaps = 1/1505 (0%)
Strand=Plus/Plus
Query 221 TTTTGTTTCAGAGATC-AATGGCCGGGACTGGATTGTTTGCTGAGATTCTTGATGGAGAA 279
|||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 296 TTTTGTTTCAGACATCAAATGGCGGGGACTGGATTGTTTGCAGAGATTCTTGATGGAGAA 355
Query 280 GTATACAAATACTACGCTGATGGTGAGTGGAAAACTTCTTCCTCAGGTAAGAGTGTTGCC 339
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 356 GTCTACAAATACTACGCTGATGGAGAGTGGAAAACCTCTTCCTCAGGTAAGAGTGTAGCC 415
Query 340 ATCATGAACCCGGCCACGAGGAAGACACAGTACAAGGTTCAAGCATGCACGCAAGAAGAA 399
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 416 ATCATTAACCCGGCCACAAGGAAGACACAGTACAAGGTTCAAGCATGCACACAAGAAGAA 475
Query 400 GTGAACGCGGTGATGGAACTGGCGAAATCAGCTCAGAAATCGTGGGCGAAAACTCCTCTT 459
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 476 GTGAACGCGGTGATGGAACTGGCGAAATCGGCTCAGAAATCGTGGGCGAAAACTCCTCTT 535
Query 460 TGGAAAAGAGCTGAGCTTCTTCACAAGGCTGCAGCAATCCTTAAGGACAACAAAGCTCCC 519
|||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct 536 TGGAAAAGAGCTGAGCTTCTTCACAAAGCTGCTGCGATCCTCAAGGACAACAAAGCTCCT 595
Query 520 ATGGCTGAGTCTCTTGTTAAAGAAATCGCTAAACCCGCCAAAGATTCTGTTACTGAGGTT 579
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATGGCTGAGTCTCTTGTCAAGGAAATCGCTAAACCCGCCAAAGATTCTGTTACTGAGGTT 655
Query 580 GTGAGGTCTGGAGATTTGATCTCTTATTGTGCTGAAGAAGGTGTTAGGATCTTAGGTGAA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGAGGTCTGGAGATTTGATCTCTTATTGTGCTGAAGAAGGTGTTAGGATCTTAGGTGAA 715
Query 640 GGGAAGTTTCTTCTCTCCGATAGCTTCCCCGGTAATGACCGTACTAAGTACTGCCTCACT 699
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGGAAGTTTCTTCTCTCTGATAGCTTCCCCGGTAATGACCGTACTAAGTACTGCCTCACT 775
Query 700 TCCAAGATTCCACTCGGTGTGGTTTTGGCTATTCCTCCATTCAATTATCCAGTTAATCTC 759
|||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 776 TCCAAGATCCCGCTCGGTGTGGTTTTGGCTATTCCTCCATTCAATTATCCGGTCAATCTC 835
Query 760 GCTGTATCGAAGATCGCTCCTGCTTTGATCGCCGGAAACTCCCTTGTCCTCAAACCTCCA 819
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCTGTGTCAAAGATCGCACCTGCTTTGATCGCCGGAAACTCCCTTGTCCTCAAACCTCCA 895
Query 820 ACTCAAGGAGCTGTTTCTTGCCTTCACATGGTACATTGCTTTCACTTAGCCGGTTTCCCA 879
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 ACTCAAGGAGCCGTTTCTTGCCTTCATATGGTACATTGCTTTCACTTAGCCGGTTTCCCA 955
Query 880 AAAGGTCTTATCAGCTGCATCACCGGAAAAGGATCTGAGATCGGCGATTTCCTCACTATG 939
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 956 AAAGGTCTTATCAGCTGCATTACCGGAAAAGGATCTGAGATCGGAGATTTCCTTACTATG 1015
Query 940 CACCCTGCTGTTAACTGCATTAGTTTCACGGGTGGTGATACCGGAATCTCAATCTCAAAG 999
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1016 CATCCTGCTGTTAACTGCATTAGTTTCACGGGTGGTGATACCGGAATCTCAATCTCTAAG 1075
Query 1000 AAAGCTGGTATGATCCCTCTTCAAATGGAACTTGGAGGTAAAGATGCATGCATTGTTCTA 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1076 AAAGCTGGTATGATCCCTCTTCAAATGGAACTTGGAGGTAAAGATGCATGCATTGTCCTA 1135
Query 1060 GATGATGCTGATCTTGATTTAGTTGCTTCCAATATCATCAAAGGAGGATTCTCTTACAGC 1119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAGGATGCTGATCTTGATTTAGTTGCTTCCAATATCATCAAAGGAGGATTCTCTTACAGC 1195
Query 1120 GGGCAGAGATGCACTGCGGTTAAGGTAGTCCTAGTGATGGAATCAGTAGCGGATGAGCTT 1179
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 1196 GGGCAGAGATGCACTGCGGTTAAGGTAGTCCTAGTAATGGAATCAGTGGCGGATGAGGTT 1255
Query 1180 GTTGAGAAAGTGAAAGCTAAAGTGGCCAAACTCACGGTGGGACCGCCCGAAGAGAACTCC 1239
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1256 GTTGAAAAAGTGAAAGCTAAAGTGGCCAAACTCACGGTGGGACCACCGGAAGAGAACTCC 1315
Query 1240 GATATCACGGCAGTGGTGTCGGAATCTTCAGCTAATTTCATTGAAGGATTGGTGATGGAT 1299
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GATATTACGGCTGTTGTGTCGGAATCTTCAGCTAATTTCATTGAAGGATTGGTGATGGAT 1375
Query 1300 GCTAAGGAGAAAGGAGCAACGTTTTGTCAAGAGTATAAAAGAGAGGGTAACTTGATTTGG 1359
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1376 GCTAAGGAGAAAGGAGCAACCTTTTGTCAAGAGTATAAAAGAGAAGGTAACTTGATTTGG 1435
Query 1360 CCGTTGCTTTTGGATAATGTTAGACCGGACATGAGGATCGCGTGGGAGGAACCATTCGGT 1419
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1436 CCGTTGCTTTTGGACAATGTTAGACCGGACATGAGGATAGCGTGGGAGGAACCATTCGGT 1495
Query 1420 CCTGTTGTGCCGGTCTTGAGGATCAATTCTGTTGAAGAAGGGATTAATCATTGCAATGCA 1479
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CCTGTCGTGCCCGTCTTGAGGATCAATTCTGTTGAAGAAGGGATTAATCATTGCAATGCT 1555
Query 1480 AGCAACTTTGGCCTTCAGGGATGTGTATTCACTAAAGACATCAACAAGGCAATACTGATC 1539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AGCAACTTTGGCCTCCAGGGATGTGTATTCACTAAAGACATCAACAAGGCAATACTGATC 1615
Query 1540 AGTGATGCAATGGAGACAGGAACCGTTCAGATCAACTCTGCGCCAGCTCGTGGACCGGAC 1599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1616 AGTGATGCAATGGAGACAGGAACGGTTCAGATCAACTCTGCGCCAGCTCGTGGACCGGAC 1675
Query 1600 CACTTCCCTTTCCAGGGACTTAAGGACAGTGGAATAGGGTCACAAGGTGTGACAAATAGC 1659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1676 CACTTCCCTTTCCAGGGACTTAAGGACAGTGGAATAGGATCACAAGGTGTGACAAATAGC 1735
Query 1660 ATCAATTTGATGACTAAAGTGAAGACCACTGTCATTAACTTGCCTACACCTTCTTACTCT 1719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ATCAATTTGATGACCAAAGTGAAGACCACTGTCATTAACTTGCCTACACCTTCTTACTCT 1795
Query 1720 ATGGG 1724
|||||
Sbjct 1796 ATGGG 1800
Score = 226 bits (122), Expect = 5e-58
Identities = 188/216 (87%), Gaps = 19/216 (9%)
Strand=Plus/Plus
Query 19 TCTCATTTCTCACCATACAATTTTTCATCTCCCTCTCTTTATCCTTTTCTAGATTTTCTT 78
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 TCTCATTTCTCACCATACAATTTTTCATCTTCCTTTCTTTATCCTTTTCTAGATTTTCTT 60
Query 79 TTTACCCTTCAATCACTTATCTCTAT--CTATC-TACCTTTCATGCTCTTTCACCACTCC 135
|||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||
Sbjct 61 TTTACCCTTCAATCACTTATCTATATATCTATCAT-CCTTTCATGCTCTTTCACCACTCC 119
Query 136 TTCCATAAAAATCTATCAAT-AATCACTTCctctctctctctctctctctTATACAACAC 194
||| |||||| ||||||| | ||||| ||||||||||||| | | ||||||
Sbjct 120 TTCAATAAAA-TCTATCATTTAATCAATTCCTCTCTCTCT-T---------A--CAACAC 166
Query 195 TCAAGAAGCGAGACACAGAGGAGAGATTTTGT-TTC 229
||||||| |||||||||||||||||| || || |||
Sbjct 167 TCAAGAAACGAGACACAGAGGAGAGAGTTAGTCTTC 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68448170265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5