BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24280.1 Length=3024 Score E Sequences producing significant alignments: (Bits) Value Ahg343993 jgi|Araly1|343993|fgenesh1_pg.C_scaffold_4000335 2459 0.0 Ahg353719 jgi|Araly1|353719|fgenesh1_pg.C_scaffold_7000892 1236 0.0 > Ahg343993 jgi|Araly1|343993|fgenesh1_pg.C_scaffold_4000335 Length=1488 Score = 2459 bits (1331), Expect = 0.0 Identities = 1431/1480 (97%), Gaps = 4/1480 (0%) Strand=Plus/Plus Query 1339 ATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 1398 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTGCTTGTTTGTGTCTTGTGTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 60 Query 1399 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGACTAA-AGAAGAAGG-TGTCCAAGT 1456 ||||||||||||||||||||||||||||||||||||| || |||| |||| | ||||||| Sbjct 61 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGAC-AACAGAAAAAGGCT-TCCAAGT 118 Query 1457 CAAAACATGAGTTACCTTTTGAAACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 1516 |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 119 CAAAGCAAGAGTTACCTTTTGAGACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 178 Query 1517 TCACACCAGACAGCTACAAAGTCTTCCACCAGAAGTACCTCATCAACAACCGTTTCTGGC 1576 |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 179 TCACACCAGAGAGCTACACAGTCTTCCACCAGAAGTACCTCATCAACAGCCGTTTCTGGC 238 Query 1577 GAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGACATCGACTGGTTTGCTT 1636 | |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 239 GCAAAGGTGGCCCCATCTTTGTCTACACCGGAAATGAAGGAGACATTGACTGGTTTGCTT 298 Query 1637 CCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGCTCTTCTTGTTTTCATTG 1696 ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 299 CCAACACCGGTTTCATGTTGGATACTGCTCCCAAGTTCCAGGCTCTTCTTGTTTTCATTG 358 Query 1697 AACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGTCGCATAAGTCAGCTGAGA 1756 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 359 AACACCGGTTCTATGGAGAATCAACGCCATTTGGAAAGAAGTCGCATAAGTCGGCTGAGA 418 Query 1757 CATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATGCAATCCTGATAAGAAGCT 1816 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 419 CATTGGGTTACCTAAGCTCTCAGCAAGCGTTGGCTGATTATGCGATCCTGATAAGAAGCT 478 Query 1817 TGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 1876 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 479 TGAAGCAGAATCTATCGTCTGAGGCATCACCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 538 Query 1877 GAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 1936 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 539 GAATGCTTGCAGCGTGGTTCAGGCTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 598 Query 1937 CCTCCGCTCCAATACTTCATTTCGATAACATTGTACCATTGACAAGCTTCTATGATGCCA 1996 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 599 CCTCCGCTCCAATACTTCATTTCGATAACATTGTGCCATTGACGAGCTTCTATGATGCCA 658 Query 1997 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAAAGTCATCAAGAGAAGCTGGG 2056 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 659 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCACAGTCATCAAGAAAAGCTGGG 718 Query 2057 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 2116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 778 Query 2117 GAACTTGCAAGGGCCTTCATTCTCAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 2176 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 779 GAACTTGCAAAGGCCTTCATTCTAAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 838 Query 2177 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 2236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 898 Query 2237 ATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 2296 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ATCCCGTGGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 958 Query 2297 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 2356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 1018 Query 2357 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGTACAG 2416 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1019 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGCACAG 1078 Query 2417 AGATGGTGATGCCAATGAGCTGCTCGAACCAGAGCATGCTCCCTCCGTACGAAAATGACT 2476 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 1079 AGATGGTGATGCCAATGAGCTGCTCAAACCAGAGCATGCTGCCTCCGTACGACAATGACT 1138 Query 2477 CTGAGGCATTCCAAGAACAATGCATGACTAGATACGGAGTCAAGCCTCGACCCCATTGGA 2536 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1139 ATGAGGCATTCCAAGAACAATGCATGAGTAGATACGGAGTCAAGCCTCGACCCCATTGGA 1198 Query 2537 TCACCACAGAATTTGGTGGAATGAGGATAGAGACAGTACTGAAGAGATTTGGAAGCAACA 2596 |||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||| Sbjct 1199 TCACCACAGAATTTGGCGGAAAGAGAATAGAGACAGTATTGAAGAGATTTGGAAGCAACA 1258 Query 2597 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 2656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 1318 Query 2657 CAAGTAGCATCGTTGCGCTTGTGACCAAGAAAGGAGCTCACCATGCAGATCTCAGGGCTG 2716 |||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1319 CAAGCAGCATCGTCGCGCTTGTGACCAAGAAAGGAGCTCACCATGCGGATCTGAGGGCTG 1378 Query 2717 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTGCCATTATAG 2776 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1379 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTTCCATTATAG 1438 Query 2777 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 2816 |||||||||||||||||||||||||||||||||||||||| Sbjct 1439 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 1478 > Ahg353719 jgi|Araly1|353719|fgenesh1_pg.C_scaffold_7000892 Length=1494 Score = 1236 bits (669), Expect = 0.0 Identities = 1231/1496 (82%), Gaps = 63/1496 (4%) Strand=Plus/Plus Query 1333 GAGAAAATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCA 1392 |||| |||||| || ||||| |||||||| ||||| ||||| || |||||||||||||| Sbjct 4 GAGAGAATGTCAGCTTGTTTATGTCTTGTATTCCTCTTCTTAACTGTTGTTGCAGAAGCA 63 Query 1393 ACGTATTCTCCAGGAGGTTTCC-ACCATCTTTCT-TCTCTAAGACTAAAGA-AG-AAGGT 1448 | |||| |||| ||||| |||| ||||||||| | ||| | ||| ||| | || ||| Sbjct 64 AAGTATCCTCCTGGAGG-TTCCTACCATCTTT-TATCTTTGAGA--AAAAACAGTAAGAC 119 Query 1449 GTCCAAGTCAAA-ACATGAGTTA-CC--T---TTTGAAACTCGTTACTTCCCTCAAAATC 1501 ||||||||||| || |||||| || | ||| | || |||||||||||||| |||| Sbjct 120 CTCCAAGTCAAAGGCA-GAGTTACCCTTTCACTTTCAGACACGTTACTTCCCTCAGAATC 178 Query 1502 TTGACCACTTCAGTTT-CACACCAGACAGCTACA-AAGTCTTCCACCAGAAGTACCTCAT 1559 |||||||||| ||||| || |||||| ||||||| || ||||||| |||||||||||||| Sbjct 179 TTGACCACTTTAGTTTCCA-ACCAGAGAGCTACAGAA-TCTTCCATCAGAAGTACCTCAT 236 Query 1560 CAACAACCGTTTCTGGCGAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGA 1619 || || || ||||||||| |||||||| ||||||||||| ||||| || |||||||| || Sbjct 237 CAGCAGCCATTTCTGGCGCAAAGGTGGCCCCATCTTTGTCTACACAGGCAATGAAGGTGA 296 Query 1620 CATCGACTGGTTTGCTTCCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGC 1679 ||| || |||||||||||||||||||| |||||| |||| |||||||||||||||| ||| Sbjct 297 CATTGAATGGTTTGCTTCCAACACCGGCTTCATGTTGGACATTGCTCCCAAGTTCCAGGC 356 Query 1680 TCTTCTTGT-TTTCATTGAACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGT 1738 ||||||||| ||| || ||||| | |||||||||| | | | |||| Sbjct 357 TCTTCTTGTCTTT-ATCGAACATAGATTCTATGGAG-----A-G-----T----CGAAGC 400 Query 1739 CGCATAAGTCAGCTGAGACATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATG 1798 |||| || | || |||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 401 CGCACAACTTGGCCAAGACATTGGGATACCTAAACTCACAGCAAGCGTTGGCTGATTATG 460 Query 1799 CAATCCTGATAAGAAGCTTGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCT 1858 ||||| ||||||||||||||||||||||||||||||| || || || ||||| || |||| Sbjct 461 CAATCTTGATAAGAAGCTTGAAGCAGAATCTATCGTCCGAAGCCTCTCCTGTCGTAGTCT 520 Query 1859 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAA 1918 |||||||||||||||||||||||||||||||||||||||| || |||||||| || || | Sbjct 521 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGGCTAAAGTATCCGCATATCA 580 Query 1919 CAATCGGTGCATTGGCATCCTCCGCTCCAATACTTCA-TTTCGATAACATTGTACCAT-T 1976 |||| |||||||| || ||||| |||||||| || || ||| ||||| ||||| || | | Sbjct 581 CAATTGGTGCATTAGCTTCCTCTGCTCCAATTCTGCAGTTT-GATAAGATTGTTCCGTCT 639 Query 1977 GACAAGCTTCTATGATGCCATTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAA 2036 ||||||| ||| | | | ||||||||||||| ||||| || ||| |||| ||||| | Sbjct 640 T-CAAGCTTTTATAACGTCGTTTCTCAGGATTTCAAGGACGCGAGTCTTAACTGTTTTGA 698 Query 2037 AGTCATCAAGAGAAGCTGG-GAAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGC 2095 ||||||||||| ||||||| || || || |||| |||| || |||||| ||||||| | Sbjct 699 AGTCATCAAGAAAAGCTGGAGA-GAACTGGAGGTTTTTTCTACCATGAAAGATGGCTTAC 757 Query 2096 AAGAACTCAGCAAAAAGTTCCGAACTTGCAAGGGCCTTCATTCTCAATAT-TCAGCCAGA 2154 |||||||||||||||||||| |||||||||||| ||||| || ||| | |||| | Sbjct 758 AAGAACTCAGCAAAAAGTTCAGAACTTGCAAGGATCTTCACGCTGTCTATCT-AGCCTCA 816 Query 2155 -GATTGGTTA-AGTGGAGCATTTGTTTATACAGCCATGGTTAATTATCCAACTGCAGCTA 2212 | | || || || ||| ||| | ||||||| ||||||||||| |||||| |||| | Sbjct 817 AGGT-GGCTAGAGAC-AGCCTTTACTGATACAGCAATGGTTAATTACCCAACTCCAGCAA 874 Query 2213 ATTTCATGGCGCCACTGCCTGGTTATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGT 2272 |||||||||| |||||||||| |||||| || ||| |||||||||||||||||||| ||| Sbjct 875 ATTTCATGGCTCCACTGCCTGCTTATCCAGTGGAGGAGATGTGCAAGATCATCGACTGGT 934 Query 2273 TCCCTCGAGGATCCAGTAATCTTGACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACT 2332 | ||| || | |||| |||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 935 TTCCTTTAGAAGCCAGCAATCTTGATCGTGCGTTTGCAGCTGCAAGCTTATACTACAACT 994 Query 2333 ATTCGGGATCAGAAAAATGCTTCGAGATGGAACAAC-AAACTGATGATCATGGACTTGAT 2391 |||| || ||||| || |||||||| || ||| ||| |||||||| ||||||||| || Sbjct 995 ATTCAGGTTCAGAGAATTGCTTCGATATTGAA-AACCAAACTGATCCTCATGGACTCAAT 1053 Query 2392 GGTTGGCAATATCAGGCGTGTACAGAGATGGTGATGCCAATGAGCTGCTCGAACCAGAGC 2451 |||||| | | ||||| || |||||||||||||||||||| ||||| || ||||||||| Sbjct 1054 GGTTGGTATTGGCAGGCATGCACAGAGATGGTGATGCCAATAAGCTGTTCAAACCAGAGC 1113 Query 2452 ATGCTCCCTCCGTACGAAAATGACTCTGAG-GCATTCCAAGAACAATG-CATGACTAG-A 2508 ||| | | || | |||| |||| | | | | ||||||| | || | | | || | Sbjct 1114 ATGTTTCAACCATTCGAATATGA-TGAAAAAGTAGACCAAGAAGACTGTC-TAA--AGGA 1169 Query 2509 -TACGGAGTCAAGCCTCGACCCCATTGGATCACCACAGAATTTGGTGGA-ATGAGGATAG 2566 ||||| ||||||||| |||| || ||||||||||| |||||||| ||| || || |||| Sbjct 1170 ATACGGTGTCAAGCCTAGACCACACTGGATCACCACCGAATTTGGCGGACAT-AGAATAG 1228 Query 2567 AGACAGTACTGAAGAGATTTGGAAGCAACATCATATTCTCCAATGGAATGCAGGACCCTT 2626 ||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || | Sbjct 1229 AGATGGTGTTGAAGAGATTTGGCAGCAACATTATATTCTCCAATGGAATGCAGGATCCAT 1288 Query 2627 GGAGCCGTGGAGGGGTTCTGAAGAACATTTCAAGTAGCATCGTTGCGCTTGTGACCAAGA 2686 ||||| | | |||||||||||||||||| || || |||||| ||||| |||||||||||| Sbjct 1289 GGAGCAGAGAAGGGGTTCTGAAGAACATATCGAGCAGCATCATTGCGTTTGTGACCAAGA 1348 Query 2687 AAGGAGCTCACCATGCAGATCTCAGGGCTGCTACAAAAGATGACCCAGAGTGGCTGAAAG 2746 |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1349 AAGGAGCTCACCATACGGATCTCAGGGCTGCTACAAAAGAAGACCCAGAGTGGCTGAAAG 1408 Query 2747 AGCAGAGGAGGCAAGAGGTTGCC-ATTATAGAGAAATGGATCAGTGAGTATTACAG 2801 | |||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct 1409 AACAGAGGAGGCAAGAAGTTGCAGAG-ATAGAGAAATGGATCAGTGAGTATTACAG 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114194554510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5