BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24330.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932470 jgi|Araly1|932470|scaffold_400458.1 1919 0.0
> Ahg932470 jgi|Araly1|932470|scaffold_400458.1
Length=1276
Score = 1919 bits (1039), Expect = 0.0
Identities = 1188/1259 (94%), Gaps = 13/1259 (1%)
Strand=Plus/Plus
Query 248 AAGGAATCAGAAATGGCGGTGGGAGAGAAGGAGCACGAAGGAACTGTGGTTGAAAGCGGC 307
|||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 9 AAGGAATCGGAAATGGCGGTGGGAGAGAAAGAGCACGAAGGAACGGTGGTTGAGAGCGGT 68
Query 308 GGCGAGAAGAATGATTCCGCCGTTGTACTCTCTGCTTCCGGCGAGAAGAAGACGACGAAG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GGCGAGAAGAATGATTCCGCCGTTGTACTCTCTGCTTCCGGCGAGAAGAAGACGACGAAG 128
Query 368 CGTAAAGGTTTGTTCTCGCGTCTTTGGAATGCGATATTTAGGGTTAGAGGTGATGATTTC 427
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 129 CGTAAAGGTTTGTTCTCGCGTATTTGGAATGCGATATTTAGGGTTAGAGGTGATGATTTC 188
Query 428 GAGAAGAGACTTAAAAATATCTCAAAGGAAGAAGCGACTGTTCGGAATAGAATGAAGCGT 487
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 189 GAGAAGAGACTTAAGAATATCTCAAAGGAAGAAGCGACTGTTCGTAATAGAATGAAGCGT 248
Query 488 AGATCGATTACAAGGAGGAACTTCATTAGAAATCTCATCGCTTTCTCTGTCTTCTTTGAG 547
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 249 AGATCGATTACAAGGAGGAACTTCATTAGAAATCTCATTGCTTTCTCTGTCTTCTTTGAG 308
Query 548 GTAATTGCAGTGAGTTATGCAATCATGACCACCAGAGATGAGGATTTGGATTGGAAACTG 607
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 309 GTAATTGCAGTGAGTTATGCAATCATGACAACCAGAGATGAGGATTTGGATTGGAAACTG 368
Query 608 AGGAGTTTCAGGATCTTGCCAATGTTTCTTTTACCTGCTGTTGCCTTTCTTCTCTATTCT 667
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 AGGAGTTTCAAGATCTTGCCAATGTTTCTTTTACCTGTTGTTGCCTTTCTTCTCTATTCT 428
Query 668 TCACTTGTTGGCTTCTGGAGGATGTGTGACCGCAGAGATCAGCATACCTTGGAAAAACTT 727
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 429 TCACTCGTTGGTTTCTGGAGGATGTGTGACCGCAGAGATCAGCATACCTTGGAAAAGCTT 488
Query 728 CAAGCAGAAATGTTGGGAAAGATTAATGAGTTAAAGGAAAGGACCAATTATTACATTACA 787
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 CAAGCAGAAATGTTGGGAAAGATCAATGAGTTAAAGGAAAGGACCAATTATTACATTACA 548
Query 788 CAGCAACTTATTCAGAGGTATGACCCTGACCCAGCTGCAAAGGCGGCTGCTGCAACTGTT 847
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CAACAACTTATTCAGAGGTATGACCCTGACCCAGCTGCAAAGGCGGCTGCTGCAACTGTT 608
Query 848 CTGGCATCCAAGTTGGGTGCTGAGTCAGGCTTGAAAGTATTTGTAGGAGATGAATCCCAA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTGGCATCCAAGTTGGGTGCTGAGTCAGGCTTGAAAGTATTTGTAGGAGATGAATCCCAA 668
Query 908 CTTGAGCCCACCGCAGG-AA-AG-AAC-A-ATG----CCAAACACTCGGGAGGGCTCAGG 958
||||| |||||| |||| || || || | ||| |||||||||| |||||||||||
Sbjct 669 CTTGACCCCACCCCAGGCAAGAGCAATGACATGGAAGCCAAACACTCACGAGGGCTCAGG 728
Query 959 AACCGAAAACAGAC-AAATACAAGAGGCAACAGCGCTGAGACCACTCCAATTCATCATTC 1017
||||||| ||| || |||||||| | |||||| |||| ||||||||||| ||||||||
Sbjct 729 AACCGAAGACA-ACCAAATACAAAACACAACAGTGCTGGGACCACTCCAACCCATCATTC 787
Query 1018 GGATAATGAGTCTAACCATTCTGGAACAAGCGAAAGAATCACCGGCACAGAACAAAACCA 1077
|||||||||||||||||||| || |||||||||||||||||||||||||| |||| |||
Sbjct 788 TGATAATGAGTCTAACCATTCGGGGACAAGCGAAAGAATCACCGGCACAGAGCAAAGCCA 847
Query 1078 ACAGATGGTGTTTGAGCATTATAATCCTCA-GGAATATGCTGCTCATGATGGTAGCTGGA 1136
|||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 848 ACAGATGGTGTTTGAGCATTTTAATCCTCATGGA-TATGCTGCTCATGATGGTAGCTGGA 906
Query 1137 TCTCACGCATTGCGGCTCTCCTTGTAGGCGAAGATCCAAGTCAGTCATATGCACTCATCT 1196
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 907 TCTCACGCATTGCGGCTCTCCTTGTAGGGGAAGATCCAACTCAGTCATATGCACTCATCT 966
Query 1197 GTGGAAACTGCCGTATGCATAACGGACTCGCCCGGAAAGAGGATTTCCCATACATTACTT 1256
||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 967 GTGGAAACTGCCGTATGCATAACGGACTCGCTCGGAAAGAGGATTTCCTGTACACTACTT 1026
Query 1257 ACTACTGTCCTCACTGTCGAGCTCTGAACAAGCCGAAACATTCAGAAGAGCATTCACTTA 1316
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1027 ACTACTGTCCTCATTGTCGAGCTCTGAACAAGCCGAAACATTCAGAAGAGCATTTACTTA 1086
Query 1317 TTGCTCCTGCAGATACACTCCCTAAAGTTTCTCTAAAGCCAATGGAAAGTGAAGTGATCA 1376
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 1087 TTGCTCCTGCAGATACACTCCCTAAAGTTTCTCTGAAGCCAATGAAAAGGGAAGTGATCA 1146
Query 1377 ATAGCAGTAGCTCGACTAGTGAACGCGGTAACAGTCCAATCCCTTTGTTACACACTCCAG 1436
|||||||||||||||| |||||| |||||||||||||||||||||||||| | | || ||
Sbjct 1147 ATAGCAGTAGCTCGACGAGTGAATGCGGTAACAGTCCAATCCCTTTGTTAAAAAGTCAAG 1206
Query 1437 AAATCGTGGAAGAAGTCCCGGAAACAGCTGAGAATGAGACACCAAACTGACCCGAGAAA 1495
||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||
Sbjct 1207 AAATCGTGGAAGAAGTCCCAGAAATAGCTGAGACCGAGACACCAAACTGACCTGAGAAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5