BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24360.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932476 jgi|Araly1|932476|scaffold_400464.1 2087 0.0
Ahg944866 jgi|Araly1|944866|scaffold_701095.1 1112 0.0
> Ahg932476 jgi|Araly1|932476|scaffold_400464.1
Length=1276
Score = 2087 bits (1130), Expect = 0.0
Identities = 1225/1272 (96%), Gaps = 2/1272 (0%)
Strand=Plus/Plus
Query 339 AATCTTAGATT--GGGAAGATGCTAGAAGGAGCAAAGTTCAACGTGCTTGCTGTTGGGAA 396
|||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2 AATCCTAGATTGGGGGAAGATGCTTGAGGGAGCAAAGTTCAACGTGCTTGCTGTTGGGAA 61
Query 397 TCATCACAACAACGACAACAATTACTATGCTTTTACGCAAGAGTTTTATCAAAAACTTAA 456
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 62 TCATCACAACAACGACAACAATTACTATGCTTTTACGCAGGAGTTTTATCAGAAACTTAA 121
Query 457 TGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACGAGTAACGCTGGAGGATCTGTCTC 516
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 122 TGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACTAGTAACGCTGGAGGATCTGTCTC 181
Query 517 AATGTCTGTGGATAACAGTAGCGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTT 576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 182 AATGTCTGTGGATAACAGTAGTGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTT 241
Query 577 GAAGCCTGTACGCCATTACTCACTCTCGGTTGGTCAAAGCGTGTTTCGCCCGGGAAGAGT 636
||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 242 GAAGCCTGTGCGTCATTACTCACTCTCTGTTGGACAAAGCGTGTTTCGCCCGGGAAGAGT 301
Query 637 TACCCATGCGTTGAATGATGATGCTTTGGCTCAAGCACTGATGGATACCAGGTATCCAAC 696
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 302 TACCCATGCGTTGAATGATGATGCCTTGGCTCAAGCACTGATGGATACCAGGTATCCAAC 361
Query 697 TGAAGGGCTGACGAACTATGATGAGTGGACGATTGATCTGAGGAAACTCAACATGGGTCC 756
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 TGAAGGGCTGGCGAACTATGATGAGTGGACGATTGATCTGAGGAACCTCAACATGGGTCC 421
Query 757 TGCCTTTGCTCAAGGGGCTTTTGGTAAATTATACAAAGGGACATACAACGGTGAAGATGT 816
||||||||||||||||||||| |||||||| ||||||||||| ||||| || || |||||
Sbjct 422 TGCCTTTGCTCAAGGGGCTTTCGGTAAATTGTACAAAGGGACTTACAATGGAGAGGATGT 481
Query 817 AGCTATCAAAATACTTGAGCGGCCAGAGAACAGCCCAGAAAAGGCACAGTTCATGGAACA 876
||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGCGATCAAGATACTGGAGTGGCCAGAGAACAGCCCAGAAAAGGCACAGTTCATGGAACA 541
Query 877 ACAGTTTCAGCAAGAGGTGTCTATGCTTGCTAATTTGAAGCACCCAAACATTGTGAGGTT 936
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 542 ACAGTTTCAGCAAGAGGTGTCTATGCTTGCCAATTTGAAGCACCCAAACATCGTGAGGTT 601
Query 937 CATTGGTGCATGTCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGG 996
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CATTGGTGCGTGCCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGG 661
Query 997 TTCAGTGAGGCAGTTTTTGACTAGGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGT 1056
|| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 662 CTCTGTGAGGCAGTTTCTGACAAAGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGT 721
Query 1057 TAAACAGGCTTTGGATGTTGCTAGGGGTATGGCTTATGTCCATGGACGCAACTTCATACA 1116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TAAACAGGCTTTAGATGTTGCTAGGGGTATGGCTTATGTCCATGGACGCAACTTCATACA 781
Query 1117 CAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGA 841
Query 1177 TTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGAATGACACCAGAAACTGGAACTTA 1236
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 842 TTTTGGTGTTGCAAGAATTGAAGTTCAAACTGAAGGAATGACACCAGAAACCGGAACTTA 901
Query 1237 CAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTGTA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 902 CAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTCTA 961
Query 1297 TAGTTTCGGGATTGTGCTGTGGGAGTTAATCACAGGACTCTTACCGTTCCAGAACATGAC 1356
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 962 TAGTTTCGGGATCGTGCTGTGGGAGTTAATCACAGGACTGTTACCGTTCCAGAACATGAC 1021
Query 1357 AGCTGTACAGGCAGCGTTTGCGGTTGTAAACAGAGGAGTGCGTCCAACAGTCCCAAACGA 1416
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1022 AGCTGTACAGGCAGCGTTTGCGGTTGTAAACCGAGGAGTGCGTCCAACAGTTCCAAACGA 1081
Query 1417 TTGTCTCCCGGTGCTGAGTGACATTATGACTCGATGTTGGGATGCTAATCCAGAAGTCCG 1476
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1082 TTGTCTCCCGGTGCTGAGTGACATCATGACTAGATGTTGGGATGCTAATCCAGAAGTCCG 1141
Query 1477 TCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCAGAAACAGAGATAATGACGAC 1536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1142 TCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCGGAAACAGAGATAATGACGAC 1201
Query 1537 AGCGAGAAAAGCCCGTTTCAGATGTTGCTTGAGCCAGCCGATGACGATTGACTAAATAAT 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGCGAGAAAAGCCCGTTTCAGATGTTGCTTGAGCCAGCCGATGACGATTGACTAAATAAT 1261
Query 1597 cccccccTCaag 1608
|| |||||||||
Sbjct 1262 CCTCCCCTCAAG 1273
> Ahg944866 jgi|Araly1|944866|scaffold_701095.1
Length=1279
Score = 1112 bits (602), Expect = 0.0
Identities = 1015/1213 (84%), Gaps = 34/1213 (3%)
Strand=Plus/Plus
Query 399 ATCACAACAACGACAACAATTACTATGCTTTTACGCAAGAGTTTTATCAAAAACT---TA 455
|||||||||| ||||||||||||||||| || || ||||| ||||||||||| ||
Sbjct 61 ATCACAACAATGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGG 120
Query 456 ATGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACGAGTAACGCTGGAGGATCTGTCT 515
| |||||| ||||||||||||| || ||||||||||| ||||| |||||||| ||||| |
Sbjct 121 AGGAAGGTACAAACATGTCCATTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGT 180
Query 516 CAATGTCTGTGGATAACAGTAGCGTTGGTTCCAGCGATGCTCTTATTGGCCA-CCCGGGT 574
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||
Sbjct 181 CAATGTCTGTGGATAACAGTAGCGTTGGTTCTAGTGATGCTCTTATTGGCCATCCC-GGT 239
Query 575 TTGAAGCCTGTACGCCAT---TACTCACTCTCGGTTGGTCAAAGCGTGTTTCGCCC-GGG 630
||||||||| | |||||| ||||| ||||| ||||| |||||||| |||||||| |||
Sbjct 240 TTGAAGCCTATGCGCCATCCCTACTCTCTCTCTGTTGGCCAAAGCGTATTTCGCCCTGGG 299
Query 631 AAGAGTTACCCATGC-GTTGAATGATGATGCTTTGGCTCAAGCACTGATGGATACCAGGT 689
|| |||||| ||||| || || |||||||| || || ||||| ||||||||| | ||
Sbjct 300 AA-AGTTACTCATGCACTT-AACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGT 357
Query 690 ATCCAACTGAAGGG-CTGACGAACTATGATGAGTGGACGATTGATCTGAGGAAAC-TCAA 747
||||||| | |||| ||| | |||||||| |||||||| || ||| ||||||||| || |
Sbjct 358 ATCCAACCG-AGGGACTGGCAAACTATGAAGAGTGGACAATAGATTTGAGGAAACTTC-A 415
Query 748 CATGGGTCCTGCCTTTGCTCAAGGGGCTTTTGGTAAA-TTATACAAAGGGACATACAACG 806
||||||||||| ||||| ||||| |||||||| ||| ||||||| |||||| |||||||
Sbjct 416 TATGGGTCCTGCTTTTGCACAAGGTGCTTTTGG-AAAGTTATACAGAGGGACTTACAACG 474
Query 807 GTGAAGATGTAGCTATCAAAATACTTGAGCGGCCAGAGAACAGCCCAGAAAAGGCAC-AG 865
| ||||||||||| || || |||| ||| || |||| | || ||| |||||||||| ||
Sbjct 475 GAGAAGATGTAGCGATTAAGCTACTCGAGAGGTCAGACAGCAACCCTGAAAAGGCACAAG 534
Query 866 TTCATGGAACAACAGTTTCAGCAAGAGGTGTCTATGCTTGCTAATTTGAAGCA-CCCAAA 924
| | ||||| ||||||||||| || || |||||||||||| ||||||||| ||| ||
Sbjct 535 -CCCTCGAACAGCAGTTTCAGCAGGAAGTTTCTATGCTTGCTTTTTTGAAGCATCCC-AA 592
Query 925 CATTGTGAGGTTCATTGGTGCATGTC-GCAAGCCAATGGTGTGGTGTATAGTGACTGAAT 983
||| || ||||| |||||||| || | || || ||||||||||| || ||||||||||
Sbjct 593 CATCGTTAGGTTTATTGGTGCGTG-CATTAAACCGATGGTGTGGTGCATCGTGACTGAAT 651
Query 984 ACGCCAAAGGAGGTTCAGTGAGGCAGTTTTTGACTAGGAGACAGAACCGAGCCGTCCCTT 1043
| || ||||||||||| || || ||||| ||||||| |||||| |||||||| || ||||
Sbjct 652 ATGCAAAAGGAGGTTCTGTCAGACAGTTCTTGACTAAGAGACAAAACCGAGCTGTGCCTT 711
Query 1044 TGAAGTTAGCTGTTAAACAGGCTTTGGATGTTGCTAGGGGTATGGCTTATGTCCATGGA- 1102
||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||| ||
Sbjct 712 TGAAGTTAGCTGTTATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCAT-GAG 770
Query 1103 CGCAACTTCATACACAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCC 1162
|||||||| |||||| | ||||| |||||||||||||| ||||| ||||| ||| ||||
Sbjct 771 CGCAACTTTATACACCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCC 830
Query 1163 ATCAAGATTGCAGATTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGAATGACACCA 1222
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 831 ATCAAGATTGCTGATTTTGGCGTTGCAAGAATCGAAGTTCAAACCGAAGGGATGACACCA 890
Query 1223 GAAACTGGAACTTACAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAA 1282
|| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||
Sbjct 891 GAGACTGGAACTTACAGATGGATGGCCCCAGAGATGATTCAGCACAGACCCTACACTCAA 950
Query 1283 AAAGTGGATGTGTATAGTTTCGGGATTGTGCTGTGGGAGTTAATCACAGGACTCTTACCG 1342
|||||||| ||||||||||| || || |||||||||||||| || ||||| | ||||||
Sbjct 951 AAAGTGGACGTGTATAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTTTGTTACCG 1010
Query 1343 TTCCAGAACATGACAGCTGTACAGGCAGCGTTTGCGGTTGTAAACAGAGGAGTGCGTCCA 1402
|||||||||||||| || || ||||| || ||||| || || ||| ||||||| ||||||
Sbjct 1011 TTCCAGAACATGACGGCGGTTCAGGCTGCATTTGCAGTGGTGAACCGAGGAGTCCGTCCA 1070
Query 1403 ACAGTCCCAAAC-GATTGTCTCCCGGTGC-TGAGTGACATTATGACTCGATGTTGGGATG 1460
|| ||||| | | |||||||| || |||| || | || || ||||| || || |||||||
Sbjct 1071 ACGGTCCC-AGCAGATTGTCTTCCTGTGCTTG-GCGAGATCATGACACGTTGCTGGGATG 1128
Query 1461 CTAATCCAGAAGTCCGTCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCAGAAA 1520
| | || ||||||||||| ||||||| ||| |||| || || || || || || ||||
Sbjct 1129 CGGACCCTGAAGTCCGTCCTTGTTTTGCAGAGATTGTCAATCTTCTCGAGGCGGCGGAAA 1188
Query 1521 CAGAGATAATGACGACA-GCGAGAAAAGCCCGTTTCAGATGTTGCTTGA-GCCAGCCGAT 1578
| ||||||||||||| | | ||||||||||||||||||||||||| ||| || | || ||
Sbjct 1189 CTGAGATAATGACGA-ATGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAA-CCAAT 1246
Query 1579 GACGATTGACTAA 1591
||| || ||||||
Sbjct 1247 GACAATCGACTAA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5