BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24395.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481294 jgi|Araly1|481294|fgenesh2_kg.4__354__AT2G24395.1 667 0.0
> Ahg481294 jgi|Araly1|481294|fgenesh2_kg.4__354__AT2G24395.1
Length=543
Score = 667 bits (361), Expect = 0.0
Identities = 503/566 (89%), Gaps = 31/566 (5%)
Strand=Plus/Plus
Query 24 aaaaaTGGCGACTTGGATAACGTTACAGCCTCC-AATTTCATGTTATTTACGGCTGATGC 82
||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||
Sbjct 1 AAAAATGGCGACTTGGATAACGTTACAGCCTCCGAA-TTCATCTTATTTACGGCTCATGC 59
Query 83 CATCATCAGCGCCGTCGCCGGCTTCATCCACGTCGCGTCGAAAACAACGTCGTCTCTTTA 142
||||||||||||||| | || | | || ||| || ||| ||||| |||
Sbjct 60 CATCATCAGCGCCGT---C-GC--C-T---CG--AAGTC----AC--CGTTGTCTCCTTA 101
Query 143 AGCCATTTCGATGCGTTCCACTTCAAG-AACAAGAGCCTCAGCTCGATCAGTCGCAGCAG 201
|||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||
Sbjct 102 AGCCATTTCGATGCGTTCCACTTC-AGCAACAAGAACCTCAGCTCGAGCAGTCGCAGCAG 160
Query 202 GGAGACGA-CAATGCTGTGATTTTGTGTGAGGATTGTAACGGGAAAGGATGGTTGCTCTG 260
||| |||| || || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 161 GGATACGATGAA-GCAGTGATTTTGTGTGAGGACTGTAACGGAAAAGGATGGTTGCTCTG 219
Query 261 CGATTTCTGTAAAGGACAGAAAACAAATGTGAAATCTGAGAATAATCGAATCTATCGACG 320
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 220 CGATTTCTGTAATGGACAGAAAACAAATGTGAAATCTGAGAACAATCGAATCTATCGACG 279
Query 321 ATGTCCAACTTGTAAAGCTGTGGGATTTGTGTTGTGTAGAAAATGTAAAGTGTTCAAGTG 380
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 280 ATGTCCAACTTGTAAAGCTGTGGGATTTGTCTTGTGTAGAAAGTGTAAAGTGTTCAAGTG 339
Query 381 TGTCACATTTCCTAACTCAGAAGACGGCGATGAACTTTTGTTCTAAGAGCTCCTTGTTCT 440
|||||| || ||||| || |||||||| ||||||||| ||||||||| ||||||||| |
Sbjct 340 TGTCACGTTGCCTAATTCTGAAGACGGTGATGAACTTATGTTCTAAGCTCTCCTTGTTGT 399
Query 441 AGCAACACTCTTCTTCTCCAACTAAGGACACCATTTGAGTTTTCAGGTTCCTTTCTTTTT 500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 400 ATCAACACTCTTCTTCTCCAACTAAGGACACCATTTGAGTTTTCAGGTTCCTTTCTTCTT 459
Query 501 CCAATTGTtatatatata-tatTGT-CTTTACTCATATGTAGCCATATGTAT-AT--GCA 555
|||||||||||||||| | | |||| ||| |||| |||||||||||||||| || |||
Sbjct 460 CCAATTGTTATATATA-ACTGTTGTTCTT-ACTCGGATGTAGCCATATGTATGATAAGCA 517
Query 556 CATTGTAACATTAATCAGACTAGTGA 581
| ||||||||||||||||||||||||
Sbjct 518 CTTTGTAACATTAATCAGACTAGTGA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5