BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24540.1 Length=1253 Score E Sequences producing significant alignments: (Bits) Value Ahg481310 jgi|Araly1|481310|fgenesh2_kg.4__370__AT2G24540.1 1620 0.0 > Ahg481310 jgi|Araly1|481310|fgenesh2_kg.4__370__AT2G24540.1 Length=1137 Score = 1620 bits (877), Expect = 0.0 Identities = 1036/1112 (93%), Gaps = 14/1112 (1%) Strand=Plus/Plus Query 130 GAAACAAGAACAAAATCTCAGCCATTGATTTCAGGTCTACCAAATGATATAGCTGAGCTT 189 ||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 33 GAAACAAGAACAAAAACTCAGCCATTGATCCCAGGTTTACCAAATGATATCGCTGAGCTT 92 Query 190 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTATATCGCTCTGTTTCATCTTCATGG 249 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 93 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTCTTTCGCTCTGTTTCATCTTCATGG 152 Query 250 AACAAAACCATCACAAACCCTAGATTCCTCTTCTCCAAGCAATCTCTTTCTATCTCTTCT 309 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 153 AACAAAACCATCACAAACCCTAGATTCCTCCTCTCCAAGCAATCTCTTTCTATCTCTTCT 212 Query 310 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAGGATTCAATGGCAATCCCTT 369 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 213 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAAGATTCAATGGCAATCCCTC 272 Query 370 GACCTTGCATCTGGCCGTTGGTTTGTTTTACCTCCCATGCCAAACTCTTTC-ACCAAAAT 428 ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |||| Sbjct 273 GACCTCGCATCTGGCCGTTGGTTTGTCTTACCTCCCATGCCAAACTCTTTCAACC-AAAT 331 Query 429 CTCGTCTCCTCACGCACTCTCATGCGCGTCGATG-CCACGTCAGGGGAAGCTTTTTGTAC 487 ||||||||||||||| |||||||||||||||| | |||||||||||||||||||| || | Sbjct 332 CTCGTCTCCTCACGCGCTCTCATGCGCGTCGA-GTCCACGTCAGGGGAAGCTTTTCGTCC 390 Query 488 TCGGCGGCGGAGA-TGTAAACCGCTCCGCCGTCGTTTACACTGCTCTAACGAATCGTTGG 546 ||||||||||||| | |||||||||||||||| |||||||| ||| |||||||||||||| Sbjct 391 TCGGCGGCGGAGACT-TAAACCGCTCCGCCGTTGTTTACACGGCTTTAACGAATCGTTGG 449 Query 547 TCGTGTATATCTCCGATGATGAGCCCGAGAACGTACTTCGTCTCCGGGAATGTTAACGGT 606 |||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||| Sbjct 450 TCGTGTATTTCTCCGATGATGAGTCCGAGAACTTACTTTAACGCCGGGAATGTTAACGGC 509 Query 607 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCAACTACGGAAGTTGAA 666 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 510 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCGACGACGGAAGTTGAA 569 Query 667 TCGTATGATCCAGATAATGACACGTGGACGGTTGTGAAGAAGTTGCCGATGGTGTTGGCG 726 ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 570 TCGTACGATCCAGAGAATGACACGTGGACGGCTGTGAAGAAACTGCCGATGGTGTTGGCG 629 Query 727 AAGTATGACTCAGCCGTGATCGGGAAAGAGATGTGTGTAACAGAAGGATGGGCGTGGCCG 786 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 630 AAGTATGACTCAGCCGTGATCGGGAAAAAGATGTGTGTGACAGAAGGATGGGCGTGGCCG 689 Query 787 TTCATGTTTCCACCGATGGGACAAGTGTACGACTCCGACGAAGGCACGTGGCGAGAGATG 846 ||||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||| Sbjct 690 TTCATGTTTTCACCGATGGGACAAGTGTACGACTCAGATGAAGACACGTGGCGAGAGATG 749 Query 847 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGCTGTTT 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 750 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGTTGTTT 809 Query 907 GTGATCTCGGAGCACGGTGATTTTCCGATGAAGGTTTATTGTTCAGATGATGACACGTGG 966 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 810 GTGATCTCCGAGCATGGTGATTTTCCGATGAAGGTGTATTGTTCAGATGATGACACGTGG 869 Query 967 AGGTACGTGAGTGGTGAGAAGCTACAGGGGGAGAAGATGCGGCGTCCTTTCGCCGTGAC- 1025 ||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| Sbjct 870 AGGTACGTGAGTGGTGACAAGCTTCCTGCGGAGAAGATGCGGCGTCCTTTCGCCGTGACC 929 Query 1026 GGG-AGCTGATGATCGTGTGTTTGTGGTGGCCAGTGGGATTAACGTAGCGGAAGGGAGAG 1084 ||| || |||||||||||||||||||||||| ||||| |||| |||||||||||||||| Sbjct 930 GGGGAG--GATGATCGTGTGTTTGTGGTGGCCGGTGGGCTTAATGTAGCGGAAGGGAGAG 987 Query 1085 TGAGTGAAGGG-CAAAATGGGGATTTTAGTGTTGAGTGGAGGATGGTTTCGTCTCCTAAA 1143 ||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 988 TGAGT-AAGGGACAAAATGGGGAATTTAGTGTTCAGTGGAGGATGGTTTCGTCTCCCAAA 1046 Query 1144 AGTTCTATTCAGTTTTCACCTGCTAGTTGTCATGTGCT-ATATGTTTGATGTGTAATTGT 1202 ||||||| ||| ||||||||||||||||| ||||| || ||| || | || ||||||||| Sbjct 1047 AGTTCTACTCAATTTTCACCTGCTAGTTGCCATGT-CTTATACGTCTAATATGTAATTGT 1105 Query 1203 TGTTAGTTTTGAATTTGTAAACTCTTTTCACT 1234 ||||||||||||||||||||| |||||||||| Sbjct 1106 TGTTAGTTTTGAATTTGTAAAATCTTTTCACT 1137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46814942076 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5