BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24560.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371 1663 0.0
Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1 1212 0.0
Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 1153 0.0
> Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371
Length=1080
Score = 1663 bits (900), Expect = 0.0
Identities = 1015/1072 (95%), Gaps = 2/1072 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACTTCTAAGACCATAACCTTCACTCTCTTCATAGCAGCACTACTCTCGTCCTGC 60
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTCGACTTCCAAGACCATAACCTTCACTCTCTTCATAGCAACACTACTCTCGTCCTGC 60
Query 61 GACGCAGCCACAAACGCTACATCGCAACCACTATTTCCAGCGATTCTTATCTTTGGCGAT 120
| |||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||||||
Sbjct 61 AAAGCAGCCGCAAACGCTACAACGCAACCGCTATTCCCAGCGATTCTAATCTTTGGCGAC 120
Query 121 TCAACAGTTGACACAGGTAACAACAACTACCACTCACAAACAATCTTCAAAGCCAAACAT 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCAACAGTCGACACAGGCAACAACAACTACCACTCACAAACAATCTTCAAAGCTAAACAT 180
Query 181 CTTCCTTACGGAATCGATCTCCCAAACCACAAAGCTAGTGGAAGATTTACAAATGGCAAA 240
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 CTTCCTTATGGAATTGATCTCCCAAACCACAAAGCTAGTGGAAGATTCACAAATGGGAAA 240
Query 241 ATCTTTTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTCCCTTCTTA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTTCTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTCCCTTCTTA 300
Query 301 CAACCAAATCTCTCTGACCAAGAGATTGTAACCGGAGTCTGTTTTGCATCAGCCGGTGCG 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 CAACCAAATCTCTCTGACCAAGAAATTGTAACCGGGGTCTGTTTTGCATCAGCCGGTGCG 360
Query 361 GGTTACGATGACCATACCAGTCTCTCTACGCAAGCGATTC-GTGTCTTGGACCAACAAAA 419
||||||||||||| |||||||||||| || ||||| | || |||||| |||||||| |||
Sbjct 361 GGTTACGATGACCGTACCAGTCTCTCGACTCAAGC-AATCGGTGTCTCGGACCAACCAAA 419
Query 420 GATGTTCAAGAATTACATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAAGCTATGGA 479
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGTTCAAGAGTTATATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAAGCTATGGA 479
Query 480 AATCATAAAAAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATCTTGAACTA 539
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GATCATAAACAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATCTTGAATTA 539
Query 540 TTACGATATTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTACCAAGACTTTGT 599
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTATGATTTTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTACCAAGACTTTGT 599
Query 600 TCTTCAAAGGCTTGACAATTTCGTGCGGGAGCTTTACAGTTTAGGTTGCCGGAAAATTAT 659
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTTAAAAGGCTTGACAATCTCGTGCGGGAGCTTTACAGTTTAGGTTGCCGGAAAATTAT 659
Query 660 GGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAAATGACTGCTAAATTCCGAAA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 GGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAGATGACTGCTAAATTCCGCAA 719
Query 720 CGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTATACAATCAGAAACT 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 CGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTGTACAATCAGAAACT 779
Query 780 TCAGAATCTATTACCTCAAATCGAAGCATCGCTTACAGGAAGCAAGATCCTTTACTCCAA 839
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 780 TCAGAAGCTATTACCTCAGATCGAAGCATCTCTTACAGGAAGCAAGATCCTTTACTGTAA 839
Query 840 TGTCTATGACCCTATGATGGACATGATGCAAAACCCTAGCAAATACGGATTTAAAGAGAC 899
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TGTCTATGACCCGATGATGGACATGATGCAAAACCCTAGCAAATACGGGTTTAAAGAGAC 899
Query 900 GAAGAGAGGATGTTGTGGAACAGGGCATTTGGAGACGAGCTTCATGTGTAATGCTTTTTC 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGGAGAGGATGTTGTGGAACAGGGCATTTGGAGACGAGCTTCATGTGTAATGCTTTTTC 959
Query 960 TCCAACGTGTAGAAATCACTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCCGAAGC 1019
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 960 TCCAACGTGTAGGAATCACTCCGAGTTTTTGTTCTTTGACTCGATTCATCCATCGGAAGC 1019
Query 1020 TACTTATAATTATATGGGCAATTTTCTAGATACTCAGATCCGCGTGTGGCTT 1071
||| ||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1020 TACCTATAACTATATGGGCAATTTTCTAGATAGGCAGATCCGTGTGTGGCTT 1071
> Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1
Length=1276
Score = 1212 bits (656), Expect = 0.0
Identities = 947/1086 (87%), Gaps = 25/1086 (2%)
Strand=Plus/Plus
Query 1 ATGTCGACTTCTAAGACCATAACCTTCACTCTCTTCAT---AGCAGCACTACTCTCGTCC 57
|||||| ||||||| ||||||||||||||||||||||| | | | |||||| |||||
Sbjct 85 ATGTCGGCTTCTAATACCATAACCTTCACTCTCTTCATCACAATAACGCTACTCGCGTCC 144
Query 58 TGCGACGCAGCCACAAACGCTACATCGCAACCACTATTTCCAGCGATTCTTATCTTTGGC 117
||| ||||| || |||| || | | ||||||| || |||||||||||||| ||||| |||
Sbjct 145 TGCAACGCATCCGCAAAGGCCAAAACGCAACCGCTTTTTCCAGCGATTCTAATCTTCGGC 204
Query 118 GATTCAACAGTTGACACAGGTAACAACAACTACCAC-TCACAAACAATCTTCAAAGCCAA 176
|||||||| || |||||||| ||||| ||||||| | |||||||||||||| | ||| ||
Sbjct 205 GATTCAACTGTCGACACAGGCAACAATAACTACC-CTTCACAAACAATCTTTAGAGCTAA 263
Query 177 ACATCTTCCTTACGGAATCGATCTCCCAAACCACAAAGCTAGTGGAAGATT-TACAAATG 235
|||| |||| ||||| || ||||||||||||||| | ||| |||||||| | |||| |
Sbjct 264 ACATGTTCCGTACGGTATTGATCTCCCAAACCACTCACCTAACGGAAGATTCT-CAAACG 322
Query 236 GCAAAATCTTT-TCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTCCC 294
| ||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 323 GAAAAAT-TTTCTCGGACATAATCGCAACCAAACTCAACATCAAACAGTTTGTTCCTCCC 381
Query 295 TTCTTACAACCAAATCTCTCTGACCAAGAGATTGTAACCGGAGTCTGTTTTGCATCAGCC 354
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 382 TTCTTACAACCAAATCTCACCGACCAAGAAATTGTAACCGGAGTCTGTTTTGCATCAGCT 441
Query 355 GGTGCGGGTTACGATGACCA-TACCAGTCTCTCTACGCAAGCGATTCGTGTCTTGGACCA 413
|||||||||||||||||| | |||||||||| | || ||||| |||||||||| ||| ||
Sbjct 442 GGTGCGGGTTACGATGAC-AGTACCAGTCTCACGACACAAGCCATTCGTGTCTCGGAACA 500
Query 414 ACAAAAGATGTTCAAGAATTACATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAAGC 473
|| ||| |||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 501 ACCAAATATGTTCAAGAGTTACATTGCTCGTCTTAAGAGTATCGTAGGTGACAAGAAAGC 560
Query 474 TATGGAA-ATCATAAAAAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATCT 532
||| || |||||||| ||||||||||||||| | |||||||||||||| ||||| ||||
Sbjct 561 CATG-AAGATCATAAACAATGCTTTGGTGGTTGTTAGTGCAGGGCCTAATGATTTCATCT 619
Query 533 TGAACTATTACGATATTCCTTCAAGGCGTCTTGAGTTTCCTCAC-ATTTCTGGTTACCAA 591
|||| ||||||||| |||| ||| |||||| | || |||| | ||||||| |||||||
Sbjct 620 TGAATTATTACGATGTTCCCTCATGGCGTCGCGTGTATCCT-AGTATTTCTGATTACCAA 678
Query 592 GACTTT-GTTCTTCAA-AGGCTTGACAATTTCGTGCGGGAGCTTTACAGTTTAGGTTGCC 649
|| ||| || ||| || |||||| |||||||||||| ||| ||||||||| |||||||||
Sbjct 679 GA-TTTCGTGCTT-AATAGGCTTAACAATTTCGTGCAGGAACTTTACAGTCTAGGTTGCC 736
Query 650 GGAAAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAAATGACTGCTA 709
|||||||| |||| ||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 737 GGAAAATTCTGGTTGGAGGGTTACCGCCAATGGGATGTTTACCGATTCAAATGACTGCTC 796
Query 710 AATTCCGAAACGCTC-TAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTATAC 768
||||||| |||| || ||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 797 AATTCCGCAACG-TCCTAAGGTTTTGCTTGGAACAAGAGAACAGAGACTCTGTTTTATAC 855
Query 769 AATCAGAAACTTCAGAATCTATTACCTCAAATCGAAGCATCGCTTACAGGAAGCAAGATC 828
||||||||||||||||| || ||| ||| ||||||| ||| ||||| ||||||||||||
Sbjct 856 AATCAGAAACTTCAGAAGCTCTTATATCAGATCGAAGTATCTCTTACGGGAAGCAAGATC 915
Query 829 CTTTACTCCAATGTCTATGACCCTATGATGGACATGATGCAAAACCCTAGCAAATACGGA 888
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 916 CTTTACTCTAATGTCTATGACCCTATGATGGAGATGATCCAAAACCCTAGCAAATACGGG 975
Query 889 TTTAAAGAGACGAAGAGAGGATGTTGTGGAACAGGGCAT-TTGGAGACGAGCTTCATGTG 947
||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 976 TTTAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGT-TCTTGGAGACGAGCTTCATGTG 1034
Query 948 TAATGCTTTTTCTCCAACGTGT-AGAAATCACTCGGAGTTTTTGTTCTTTGACTCGATTC 1006
|||||||| |||||| | |||| |||| || |||||||||| ||||||||||||||||||
Sbjct 1035 TAATGCTTATTCTCCCATGTGTCAGAA-TCGCTCGGAGTTTCTGTTCTTTGACTCGATTC 1093
Query 1007 ATCCATCCGAAGCTACTTATAATTATATGGGCAATTTTCTAGATACTCAGATCCGCGTGT 1066
| ||||| |||||||| |||||||| || |||||| |||| |||||| |||| || | ||
Sbjct 1094 ACCCATCAGAAGCTACCTATAATTACATTGGCAATGTTCTGGATACTAAGATTCGTGGGT 1153
Query 1067 GGCTTA 1072
||||||
Sbjct 1154 GGCTTA 1159
> Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1
Length=1181
Score = 1153 bits (624), Expect = 0.0
Identities = 927/1072 (86%), Gaps = 25/1072 (2%)
Strand=Plus/Plus
Query 1 ATGTCGACTTCTAAGACCATAACCTTCACTCTCTTCAT---AGCAGCACTACTCTCGTCC 57
|||||||||||||| ||||||||||| ||||| || || | || ||||| || |||||
Sbjct 3 ATGTCGACTTCTAAAACCATAACCTTAACTCTTTTTATCGCAACAACACTATTCGCGTCC 62
Query 58 TGCGACGCAGCCACAAACGCTACATCGCAACCACTATTTCCAGCGATTCTTATCTTTGGC 117
||| |||||| | ||||||| ||| | |||| || || ||||||||||| ||||| |||
Sbjct 63 TGCAACGCAGTCGCAAACGCAACAACAAAACCGCTCTTCCCAGCGATTCTAATCTTCGGC 122
Query 118 GATTCAACAGTTGACACAGGTAACAACAACTACCAC-TCACAAACAATCTTCAAAGCCAA 176
|||||||| || |||||||| ||||||||||||| | | || ||||||||||| ||| |
Sbjct 123 GATTCAACCGTCGACACAGGCAACAACAACTACC-CTTTACCAACAATCTTCAGAGCTGA 181
Query 177 ACATC-TTCCTTACGGAATCGATCTCCCAAACCACAAAGCTAGTGGAAGATT-TACAAAT 234
||| | |||||||||| || ||||| ||| | |||||||| |||||||| | ||||
Sbjct 182 ACA-CTTTCCTTACGGCATGGATCTTCCAGATGGCAAAGCTAACGGAAGATTCT-CAAAC 239
Query 235 GGCAAAATCTT-T-TCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTC 292
|| |||| ||| | ||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 240 GG-AAAA-CTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCTC 297
Query 293 CCTTCTTACAACCAAATCTCTCTGACCAAGAGATTGTAACCGGAGTCTGTTTTGCATCAG 352
| |||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||
Sbjct 298 CTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCAG 357
Query 353 CCGGTGCGGGTTACGATGACCAT-ACCAGTCTCTCTACGCAAGCGATTCGTGTCTTGGAC 411
| ||||| |||||||| |||| | ||||||||||| || ||||| |||||||||| |||
Sbjct 358 CTGGTGCCGGTTACGACGACC-TAACCAGTCTCTCCACACAAGCCATTCGTGTCTCGGAA 416
Query 412 CAACAAAAGATGTTCAAGAATTACATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAA 471
|||| ||| |||||||||| ||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 417 CAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAGAAA 476
Query 472 GCTATGGAAATCATAAAAAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATC 531
|| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 477 GCAATGGAGATCATAAACAATGCTTTAGTGGTTATCAGTGCAGGGCCTAACGATTTCATT 536
Query 532 TTGAACTATTACGATATTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTACCAA 591
|||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||
Sbjct 537 TTGAACTATTACGATATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTACCAA 596
Query 592 GACTTTGTTCTTCAAAGGCTTGACAATTTCGTGCGGGAGCTTTACAGTTTAGGTTGCCGG 651
|||||| ||||| |||||||||| ||| |||||||||||||||||||| |||||| ||||
Sbjct 597 GACTTTATTCTTAAAAGGCTTGAAAATATCGTGCGGGAGCTTTACAGTCTAGGTTCCCGG 656
Query 652 AAAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAAATGACTGCTAAA 711
|| ||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||| ||||
Sbjct 657 AATATTTTGGTTGGAGGTTTGCCGCCAATGGGGTGTTTACCGATCCACATGACTGTTAAA 716
Query 712 TTCCGAAACGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTATACAAT 771
||||| |||| | | || ||||||||||||||| | ||| |||||||||| |||||||||
Sbjct 717 TTCCGCAACGTTTTTAGATTCTGCTTGGAACAACATAACAGAGACTCTGTTTTATACAAT 776
Query 772 CAGAAACTTCAGAATCTATTACCTCAAATCGAAGCATCGCTTACAGGAAGCAAGATCCTT 831
||||||||||||||||| || || ||| |||||||||| |||| ||||||||| ||||||
Sbjct 777 CAGAAACTTCAGAATCTCTTGCCCCAACTCGAAGCATCTCTTAAAGGAAGCAAAATCCTT 836
Query 832 TACTCCAATGTCTATGACCCTATGATGGACATGATGCAAAACCCTAGCAAATACGGATTT 891
||| || |||||||| | ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 837 TACGCCGATGTCTATAATCCTATGATGGAGATGATGCAAAACCCTAGCAAATACGGGTTC 896
Query 892 AAAGAGACGAAGAGAGGATGTTGTGGAACAGGGCAT-TTGGAGACGAGCTTCATGTGTAA 950
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 897 AAAGAGACGAAGAGAGGATGTTGTGGAACAGGG-TTCTTGGAGACGAGCTTCATGTGTAA 955
Query 951 TGCTTTT-TCTCCAACGTGT-AGAAATCACTCGGAGTTTTTGTTCTTTGACTCGATTCAT 1008
|| |||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 956 TG-TTTTCTCTCCTACGTGTCAG-AATCGGTCGGAGTTTTTGTTCTTTGACTCGATTCAT 1013
Query 1009 CCATCCGAAGCTACTTATAAT-T-ATATGGGCAATTTTCTAGATACTCAGAT 1058
||||| |||||||| |||||| | ||| || |||| |||| ||| || ||||
Sbjct 1014 CCATCGGAAGCTACCTATAATGTCATA-GG-CAATCTTCTGGATCCTAAGAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5