BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24570.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1 1847 0.0 Ahg944827 jgi|Araly1|944827|scaffold_701056.1 453 1e-126 > Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1 Length=1298 Score = 1847 bits (1000), Expect = 0.0 Identities = 1214/1313 (92%), Gaps = 32/1313 (2%) Strand=Plus/Plus Query 3 TTTCGCTCTCTCATTCATCaaaaaaaaCTTGCACATCTTCTCAGATCTTCAAGTTTCTCC 62 ||||||||||||||||||| | |||||||| ||||| ||||||||||||||| Sbjct 1 TTTCGCTCTCTCATTCATC-ACAAAAACTT-CACATTTTCTCAGATCTTCAA-------- 50 Query 63 TCTGGTTTCTCATCATGACCGTTGATATTATGCGTTTACCTAAGATGGAAGATCAAACGG 122 ||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| Sbjct 51 TCT--TTTCTCATCATGACCGTGGATATCATGCGCTTACCGAAGATGGAAGATCAAACGG 108 Query 123 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCGTGTCCTCT 182 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 109 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCATGTCCTCT 168 Query 183 CTAACCGTCCCGAAGAACGTAACGTTGATTGCTCTGAGATCACTGATTTCACAGTTTCTA 242 |||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||| Sbjct 169 CTAACCGTCCTGAAGAACGTCACGTTGATTGTTCTGAAATCACCGATTTCACAGTTTCTA 228 Query 243 AGTTCAAGAAAGTTATCTCTCTTCTTAACCGTTCCGGTCACGCCCGGTTTAGACGTGGTC 302 ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| | Sbjct 229 AGTTCAAGAAAGTCATCTCTCTTCTTAACCGAACCGGTCACGCCCGGTTTCGACGTGGAC 288 Query 303 CGGTTCATT--CC-CCT-C--C-T--TCCTCCTCCGTTCCTCCACCGGTGAAAGTGACAA 353 ||||||||| || ||| | | | ||||||||| ||||||||||||||||||| ||| Sbjct 289 CGGTTCATTCCCCTCCTCCTTCATCCTCCTCCTCCATTCCTCCACCGGTGAAAGTTACAC 348 Query 354 CTCCGGCTCCCACTCAGATCTCTGCTCCAGCACCGGTTAGCTTCGTTCAGGCAAATCAAC 413 |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 349 CTCCGGCTCCAACTCAGATCTCTGCTCCGGCACCGGTTAGCTTCGTTCAGTCAAATCAAC 408 Query 414 AAAGCGTGACGTTAGATTTCACTAGACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGG 473 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 409 AAAGCGTGACGTTAGATTTCACTAGACCAAGCGTGTTTGGCGCTAAAACCAAGAGCTCCG 468 Query 474 AGGTTGTTGAGTTTGCTAAAGAGAGCTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 533 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 469 AGGTTGTTGAGTTCGCTAAGGAGAGTTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 528 Query 534 CTGCGATCACCGGTGATGGAAGTGTCTCTAAAGGCTCTTCGATCTTTCTTGCTCCGGCTC 593 | |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 529 CGGCGATCACCGGTGACGGAAGCGTCTCTAAAGGATCTTCTATCTTTCTTGCTCCGGCTC 588 Query 594 CAGCGGTGCCAGTGACTTCCTCCGGGAAACCGCCGCTTTCTGGTCTTCCTTACAGGAAGA 653 | ||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 589 CGGCGGTTCCATTGAATTCCTCCGGGAAACCGCCGCTCTCTGGTCTTCCTTACAGAAAGA 648 Query 654 GATGCTTTGAACATGACCACTCTGAAGG-CTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 712 |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| Sbjct 649 GATGCTTTGAACATGACCACTCCG-AGGACTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 707 Query 713 GGCAAGTGCCATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 772 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 708 GGCAAGTGCCACTGCAAGAAAAGCCGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 767 Query 773 GCGGTAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGA 832 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 768 GCGATAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGGAAGTACGGA 827 Query 833 CAAAAACCGATCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGA 892 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 828 CAAAAACCGATCAAAGGCTCACCACATCCACGAGGTTATTACAAGTGTAGTACATTCAGA 887 Query 893 GGATGTCCAGCGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATGTTGATTGTG 952 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 888 GGATGTCCAGCGAGGAAACACGTGGAACGAGCTTTGGATGATTCAACGATGCTGATTGTG 947 Query 953 ACGTACGAAGGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCTAGC 1012 || |||||||| || |||||||| ||||||||| ||||||||||| || ||||||||||| Sbjct 948 ACTTACGAAGGGGAACACCGTCACCACCAGTCCGCGATGCAGGAGAATATAACTCCTAGC 1007 Query 1013 GTGAGTGGTTTGGTGTTTGGTTCGGCTTGAAGAATTAATTAGTTTGGTA-GTTTTGTAAT 1071 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1008 GTGAGTGGTTTGGTGTTTGGTTCTACTTGAAGAATTAATTAGTTTGGTAGGTTTTGTAAT 1067 Query 1072 ATTTTGAGAAATAGAGGGGTTGGTTTTGT-A-At-tt-ttt-ttCTATAACAAAATTAGT 1126 |||||||||||||||||||||| |||||| | || || ||| ||||| |||||||||||| Sbjct 1068 ATTTTGAGAAATAGAGGGGTTGATTTTGTAATATCTTCTTTCTTCTA-AACAAAATTAGT 1126 Query 1127 TTTAGAtttttttttAGTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1186 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1127 TTTAGA-TTTTTTTTATTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1185 Query 1187 AATTCTTACTACATTTTCATAATTTCTTGTTTGATATATTTAGTGGTGTCATGTAAGAAA 1246 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| Sbjct 1186 AATTCTTACTACATTTTCATAATTTCTTGTGTGATATATTTAGCGGTGTCATGTAAAAAA 1245 Query 1247 ATGATGTTTAGCAAAGTAATTGGTATATAAATGTGTAGGCATATGTAT-TTAA 1298 |||||||||||| |||||||||| ||||||||||||||| |||||||| |||| Sbjct 1246 ATGATGTTTAGCGAAGTAATTGGCATATAAATGTGTAGGTATATGTATATTAA 1298 > Ahg944827 jgi|Araly1|944827|scaffold_701056.1 Length=1049 Score = 453 bits (245), Expect = 1e-126 Identities = 543/682 (80%), Gaps = 40/682 (6%) Strand=Plus/Plus Query 379 TCCAGCACCGGT-TAGCTTCGTTCAGGCAAATCAACAAAGCGTGACGTTAGATTTCACTA 437 |||| |||| || ||||| ||||| | ||||| | ||||| || | |||||| | | Sbjct 365 TCCACCACC-GTCGAGCTTTGTTCACTCGAATCAGCCTAGCGTAACACTCGATTTCTCCA 423 Query 438 GACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGGAGGTTGTTGAGTTTGCT-AAA-GA 495 ||| ||| | || ||| | ||| | |||||||| || || || || || ||| || Sbjct 424 AACCAAGCATCTTCGGCACCAAAGCTAAGAGCTCCGA-CCTG--GA-ATT-CTCAAAGGA 478 Query 496 GAGCTTTAGCGTATCTTCT-AACTCTTCTTTCATGTCTTCTGCG-ATCACCGGTGATGGA 553 | ||| ||||| |||| | |||||||| |||||||| || | | || ||||| || || Sbjct 479 AAACTTCAGCGTTTCTT-TAAACTCTTCCTTCATGTCGTC-GGGAATTACCGGAGACGGC 536 Query 554 AGTGTCTCTAAAGGCTCTTCGATCTTTCTTGC-TCCGGCTCCAG-CGGTGCCAGTG-ACT 610 || || || || || |||||||| || | | ||||| | || ||| ||| || Sbjct 537 AGCGTTTCCAATGG---AAAAATCTTTCTCGCGT-CTGCTCC-GTCGCAGCCTGTGAAC- 590 Query 611 TCCTCCGGGAAA-CCGCCGCTT----TCTGGTCTTCCTTACAGGAAGAGATGCTTTGAAC 665 |||||| ||||| || ||| || |||||| ||||||||| ||||||||| | || | Sbjct 591 TCCTCC-GGAAAGCCACCG-TTGGCCGCTGGTCATCCTTACAGAAAGAGATGCCTCGAGC 648 Query 666 ATGACCACTCTGAAG-GCTTT-TCCGGC-AAGATCTCTGGCTCCGGCAACGGCAAGTGCC 722 |||| ||||| | || | ||| |||||| ||| |||| ||||||||| |||| ||||||| Sbjct 649 ATGAGCACTCCG-AGAG-TTTCTCCGGCAAAG-TCTCCGGCTCCGGCTACGGAAAGTGCC 705 Query 723 ATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGGTAAGTG 782 |||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||| Sbjct 706 ATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACTGTGAGAGTACCGGCGATAAGTG 765 Query 783 CAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGACAAAAACCGA 842 |||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 766 CAAAGATCGCCGATATTCCACCGGACGAATATTCTTGGAGGAAGTACGGACAAAAACCGA 825 Query 843 TCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGAGGATGTCCAG 902 |||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||| Sbjct 826 TCAAAGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAG 885 Query 903 CGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATG-TTGATTGTGACGTACGAA 961 ||||||||||||||||| |||| || |||||| || ||||| || || ||||| |||||| Sbjct 886 CGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTT-ATCGTGACATACGAA 944 Query 962 GGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCT--AG-CGTGAGT 1018 ||||||||||||||| |||| ||| ||||||||||| || | || || || ||| | | Sbjct 945 GGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCGTTAAT 1004 Query 1019 GGTTTGGTGTTTGGTTCGGCTT 1040 | ||| ||||||| ||||||| Sbjct 1005 GATTTAGTGTTTGCCTCGGCTT 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5