BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24820.1 Length=1788 Score E Sequences producing significant alignments: (Bits) Value Ahg932590 jgi|Araly1|932590|scaffold_400578.1 2647 0.0 Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1 132 1e-29 > Ahg932590 jgi|Araly1|932590|scaffold_400578.1 Length=1660 Score = 2647 bits (1433), Expect = 0.0 Identities = 1582/1654 (96%), Gaps = 10/1654 (1%) Strand=Plus/Plus Query 49 AAGAATCCGCCATGGCTGTTCCATTTCTAAGCTCTTCTCTACAACTCACACCCACTTCTC 108 |||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 10 AAGACTCCTCCATGGCTGTTCCATTTCTAAGCTCTTCTCTTCTACTCACACCCACTTCTC 69 Query 109 CGATTCTCTTCACTAAAGTAACACCAACACCAATAATCCACAACCACAGATC-A-A-CAT 165 ||||||||||||||||| ||||| | ||||||||||||||||||| ||||| | | ||| Sbjct 70 CGATTCTCTTCACTAAACTAACA-C--CACCAATAATCCACAACCAGAGATCAACACCAT 126 Query 166 GCACTATACCCACAAAGCCTCGTCTACGTCTCCTCCGCCGCTCCGCCGTCGCTGGAACCG 225 ||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 127 GCACTGTACCCACAAAACCCCGTCTACGTCTCCTCCGCCGTTCCGCCGTCGCTGGAACCG 186 Query 226 CCGTAT-CTGATCAAACAGAAGGAGGTGGAGATGTTCTTTTAAACCCTGAAGAAGAGAAA 284 |||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 187 CCGT-TGCTGATCAAACAGAAGGAGGAGGAGAGGTTCTTTTAAACCCTGAAGAAGAGAAA 245 Query 285 CGTGTTGAGGTGGCGGATTATGATTGGACAGAGGAATGGTATCCATTGTACTTAACTAAA 344 ||||||||||| || |||||||||||||||||||| ||||| ||||||||| | |||||| Sbjct 246 CGTGTTGAGGTAGCAGATTATGATTGGACAGAGGAGTGGTACCCATTGTACCTCACTAAA 305 Query 345 AACGTCCCTGAAGATGCGCCTCTTGGCCTCACCGTCTACGATCGTCAAATTGTTTTGTAT 404 ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 306 AACGTCCCTGACGATGCGCCGCTTGGTCTCACCGTCTACGATCGTCAAATAGTTTTGTAT 365 Query 405 AAAGACGGTGAAGGAACACTTCGTTGTTACGAAGATCGGTGTCCTCATCGGTTGGCTAAG 464 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 366 AAAGACGGTGAAGGAACACTACGTTGTTACGAAGATCGGTGTCCTCATCGTTTGGCTAAG 425 Query 465 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTATCATGGTTGGCAATTT 524 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 426 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTACCATGGTTGGCAATTT 485 Query 525 GAAGGAGAGGGCAAATGTGTCAAGATTCCTCAGCTTCCTGCAAGTGCTAAGATTCCAAAG 584 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 486 GAAGGAGAGGGTAAATGTGTCAAGATTCCTCAGCTTCCTGCGAGTGCTAAGATTCCAAAG 545 Query 585 GCTGCTTGTGTGAAGACGTATGAGGTGAAGGATTCACAAGGAGTTGTGTGGGTGTGGATG 644 || |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| Sbjct 546 GCGGCTTGTGTGAAGACATATGAGGTGAAAGATTCACAGGGAGTTGTATGGGTGTGGATG 605 Query 645 TCAACAAAGACACCTCCAAACCCTGAGAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 704 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 606 TCAACAAAGACACCTCCAAACCCTGAAAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 665 Query 705 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGACCATTCCATTCTT-TTAGA 763 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || Sbjct 666 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGATCATTCCATTCTTCTT-GA 724 Query 764 GAATCTGATGGATCCTGCTCATGTTCCTATCTCTCATGATAGAACGGATTTCACTGCTAA 823 |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 725 GAATCTGATGGATCCTGCTCATGTTCCTATTTCTCATGATAGAACTGACTTCACTGCTAA 784 Query 824 AAGAGAAGATGCTCAGCCTTTGGTTTTCGAGGTCACAGAGCGAAGTAATCGGGGTTTCGC 883 ||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| Sbjct 785 AAGAGAAGATGCTCAGCCTCTGGTTTTTGAGGTTACAGAGAGAAGTAATCGGGGTTTCGC 844 Query 884 AGGGACTTGGGGCCGAGAGAAAGAAGGTGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 943 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 845 AGGGACTTGGGGTCGAGAGAAAGACGGAGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 904 Query 944 TCCTTGTGTTCTGCAGAACAATCGAGAGTTCGAGGGGAAGGATGGAGTGAAGAACTATTT 1003 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 905 TCCTTGTGTTCTGCAGAATAATCGAGAGTTTGAGGGGAAGGATGGAGTGAAGAACTATTT 964 Query 1004 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1024 Query 1064 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1084 Query 1124 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAATGAGGTTCTGAT 1183 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1085 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAACGAGGTTCTGAT 1144 Query 1184 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTGAATCTAAAGTCATCGGACACATGGGT 1243 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1145 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTAAATCTAAAGTCATCGGACACATGGGT 1204 Query 1244 CGCTGAATATAGAAAGTGGATGGACAAAGTTGGTCATGGGATGCCTTACCATTTCGGGCA 1303 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1205 CGCTGAGTATAGAAAGTGGATGGACAAAGTTGGTCACGGGATGCCTTACCATTTCGGGCA 1264 Query 1304 TAGGACCATATCTCTCCCCAAAGTCCCTCCTGTCGTGGAACATGCCCCGGCAGGGCTCAT 1363 ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 1265 TAGGACCATATCTCTCCCCAAGGTCCCTCCTGTAGTGGAACATGCCCCTGCAGGGCTCAT 1324 Query 1364 TGCAGCTCTCTCTGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCATGCTCCCAA 1423 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1325 TGCAGCTCTCTCGGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCACGCTCCCAA 1384 Query 1424 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1444 Query 1484 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACGGCTTTGGC 1543 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1445 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACAACTTTGGC 1504 Query 1544 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCAGCAGCATTGTGCTC 1603 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1505 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCGGCAGCATTGTGCTC 1564 Query 1604 AGCCGCAGCTTATACCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1663 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 GGCCGCAGCTTATGCCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1624 Query 1664 ACACAGAAGACTATGAAAATGTATAGTGTCATGT 1697 ||||||||||||||||||||||||| || ||||| Sbjct 1625 ACACAGAAGACTATGAAAATGTATATTGGCATGT 1658 > Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1 Length=1708 Score = 132 bits (71), Expect = 1e-29 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1709 CCAACAATATGTATTTCATGAAATAAATTTTTGCTTGTAAACGCAATTATATAATTCAGA 1768 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1708 CCAACAATATGTATTTCATGAAATATTTTTTTGCTTGTAAACGCAATTATATAATTCAGA 1649 Query 1769 AGGTTCCAATGTTTGCCATC 1788 |||||||| ||||||||||| Sbjct 1648 AGGTTCCAGTGTTTGCCATC 1629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67115011690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5