BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25080.1 Length=987 Score E Sequences producing significant alignments: (Bits) Value Ahg932631 jgi|Araly1|932631|scaffold_400619.1 1216 0.0 Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769 451 4e-126 > Ahg932631 jgi|Araly1|932631|scaffold_400619.1 Length=751 Score = 1216 bits (658), Expect = 0.0 Identities = 720/750 (96%), Gaps = 3/750 (0%) Strand=Plus/Plus Query 65 ACTCGTCTCCGGTAACCAAAAATGGTTTCCATGACTACTTCATCTTCTTCGTACGGAACA 124 ||||||||||||||||| ||||||||||| || |||| ||| |||||||| |||| | || Sbjct 1 ACTCGTCTCCGGTAACC-AAAATGGTTTCGATAACTATTTCGTCTTCTTCATACGCACCA 59 Query 125 TTCTCTACAGTCGTCAACAGTTCTAGACCTAATTCCTCAGCAACCTTTCTCGTCCCTTCC 184 |||||||||||| |||||| ||| ||||||||||| || |||||||||||||||||||| Sbjct 60 TTCTCTACAGTCTTCAACACTTCCAGACCTAATTCATCTTCAACCTTTCTCGTCCCTTCC 119 Query 185 TTGAAATTCTCCACCGGAATATCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAA 244 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTCAAATTCTCCACCGGAATATCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAA 179 Query 245 TCTCCAATTAATCCTGGGTTTCTCTTCAAGTCTCGTCCTTTCACTGTCCAAGCTAGAGCT 304 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 180 TCTCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCACTGTTCAAGCTAGAGCT 239 Query 305 GCTGCAGAAAAAACCGTTCACGATTTCACCGTTAAGGACATTGATGGGAAGGATGTTGCT 364 ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 240 GCTGCAGAAAAGACCGTTCACGACTTCACCGTTAAGGACATTGATGGGAAAGATGTTGCT 299 Query 365 TTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTG 424 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTGAACAAATTTAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTG 359 Query 425 ACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAA-CTCAAGGATT 483 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 360 ACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAAGC-CAAGGATT 418 Query 484 TGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCCGA 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 419 TGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCGGA 478 Query 544 GATCAAACAATTCGCTTGCACCCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGGTTGA 603 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GATCAAACAATTTGCTTGCACCCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGGTTGA 538 Query 604 CGTGAATGGACCAAGCACAGCGCCGATCTACGAGTTCTTGAAATCAAACGCAGGAGGATT 663 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 539 CGTGAATGGACCAAGCACAGCGCCCATCTACGAATTCTTGAAATCAAACGCAGGAGGATT 598 Query 664 CTTGGGTGGTCTCATTAAATGGAACTTTGAGAAGTTCTTGATTGATAAAAAGGGAAAGGT 723 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 599 CTTGGGTGGTCTCATTAAATGGAACTTTGAAAAGTTTTTGATCGATAAAAAGGGAAAGGT 658 Query 724 CGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAAAGACATCCAGAAGTT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAAAGACATCCAGAAGTT 718 Query 784 GCTTGCCGCTTAAAAACTTTTGCTCATGAG 813 |||||||||||||||||||||||||||||| Sbjct 719 GCTTGCCGCTTAAAAACTTTTGCTCATGAG 748 > Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769 Length=723 Score = 451 bits (244), Expect = 4e-126 Identities = 501/621 (81%), Gaps = 34/621 (5%) Strand=Plus/Plus Query 171 TTCTCGTCCCTTCCTTGAAATTCTCCACCGGAATATC-GAATTTC-G-CGA-ATCT--G- 223 |||||||||||| |||| |||||||||||||| ||| || || | | |||| | Sbjct 77 TTCTCGTCCCTTAATTGAGATTCTCCACCGGAACATCAAAAACTCGGAATATATCTGGGT 136 Query 224 -A-GTAATGGGTTTTCTCTAAAATC-TCCAATTAATCCTGGGTTTCTCTTCAAGTCTC-G 279 | |||||||| |||| || ||||| || || ||||| | ||||||| |||| || | | Sbjct 137 TAGGTAATGGGGTTTCCCTGAAATCGTCGAA-TAATCATAGGTTTCTAGTCAAATC-CAG 194 Query 280 TCCTTTCACTGTCCAAGCTAGAGCTGCTGCAGAAAAAACCGTTCACGATTTCACCGTTAA 339 ||| ||| | || |||||||||||||| || || |||||||||||||| || || Sbjct 195 AAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAGACTGTTCACGATTTCACTGTAAA 254 Query 340 GGACATTGATGGGAAGGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGAT-TG 398 |||||| |||||||| |||||| || || |||||||||| || ||| | ||||||| | Sbjct 255 GGACATAGATGGGAATGATGTTTCTCTGGACAAATTCAAAGGAAAACCTCTGTTGATCT- 313 Query 399 TCAATGTTGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGT 458 | || || ||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 314 TTAACGTCGCTTCAAGATGTGGTTTGACATCATCAAATTACTCGGAGCTTTCTCATCTGT 373 Query 459 ACGAGAAATACAA-AACTCAAGG--ATTTGAGATTCTAGCTTTTCCCT-GCAATCAGTTT 514 |||| |||||||| ||| ||||| |||||||||||| ||||| |||| ||||||| ||| Sbjct 374 ACGAAAAATACAAGAAC-CAAGGTGATTTGAGATTCTTGCTTT-CCCTTGCAATCAATTT 431 Query 515 GGTT-TCCAAGAGCCCGGGTCAAACTCC-GAGATCAAACAATTCGCTTGCACCCGGTTTA 572 || || |||| ||||| |||||| || |||||||| ||||| ||||||||||| || | Sbjct 432 GGAGGTC-AAGAACCCGGTTCAAAC-CCTGAGATCAAGCAATTTGCTTGCACCCGATTCA 489 Query 573 AAGCAGAGTTCCCTATATTTGATAAGGT-TGACG-TG--AATGGACCAAGCACAGCGCCG 628 ||| |||||||||||||| || ||||| || | || ||||||||||||||||| || Sbjct 490 AAGTGGAGTTCCCTATATTCGACAAGGTATGTTGATGTCAATGGACCAAGCACAGCTCCA 549 Query 629 ATCTACGAGTTCTTGAAATCAAACGCAGGAGGATT-CTTGGGTGGTCTCATTAAATGGAA 687 |||||| ||||||||||||| || || || || || ||||| || | |||| |||||||| Sbjct 550 ATCTACAAGTTCTTGAAATCTAATGCTGGTGGTTTTCTTGG-TGATATCATCAAATGGAA 608 Query 688 CTTTGAGAAGTTCTTGATTGATAAAAAGGG-AAAGGTCGTTGAGAGGTACCCTCCCACCA 746 ||||||||| |||||| ||||||| ||| | |||| | || ||||| ||||||||||| | Sbjct 609 CTTTGAGAAATTCTTGGTTGATAAGAAGTGCAAAGTT-GTCGAGAGATACCCTCCCACGA 667 Query 747 CATCCCCTTTCCAAA-TCGAG 766 | || |||||||||| ||||| Sbjct 668 CTTCTCCTTTCCAAAATCGAG 688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36674246154 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5