BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25150.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481373 jgi|Araly1|481373|fgenesh2_kg.4__433__AT2G25150.1 2170 0.0
> Ahg481373 jgi|Araly1|481373|fgenesh2_kg.4__433__AT2G25150.1
Length=1448
Score = 2170 bits (1175), Expect = 0.0
Identities = 1333/1410 (95%), Gaps = 7/1410 (0%)
Strand=Plus/Plus
Query 10 ATTCTAACATTGGTAAGAGATGGCAAACCAAAGAAAACCAATCCTTCCTCTATTACTTGA 69
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCTAACATTGGTAAGAGATGTCAAACCAAAGAAAACCAATCCTTCCTCTATTACTTGA 60
Query 70 AAAGAAACCAGTTGAGCTTGTTAAACCCTCAAAACACAC-TCAT-TG-TGAAACTCTTTC 126
|||||||||||||||||||||||||||| |||||||||| || | || ||||||||| ||
Sbjct 61 AAAGAAACCAGTTGAGCTTGTTAAACCCGCAAAACACACTTCTTGTGATGAAACTCTCTC 120
Query 127 CCTCTCCACTTTAGACAACGATCCTTTCAATGAAGTTATGTATGCAACGATTTACGTTTT 186
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 121 CCTCTCCACTTTAGACAACGATCTTTTCAATGAAGTTATGTACGCAACGATCTACGTTTT 180
Query 187 CAAAGCCAATGGAAAGAACCTAGATGATCCTGTCTCTTTGCTTAGGAAGGCTTTGTCCGA 246
|||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAGCAAACCAAAAGAAGCTAAATGATCCTGTCTCTTTGCTTAGGAAGGCTTTGTCCGA 240
Query 247 ACTTCTTGTGCATTACTA-CCCTCTTTCGGGCAAGCTGATGAGAAGTGAGAGTAATGGAA 305
|||||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||| |
Sbjct 241 ACTTCTTGTGCATTACTATCCC-CTTTCAGGCAAGCTAATGAGAAGTGAGAGTAGTGGTA 299
Query 306 AGCTCCAGTTGGTTTATCTGGGTGAGGGAGTTCCATTTGAAGTCGCTACATCAACTCTAG 365
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCTTCAATTGGTTTATCTAGGTGAGGGAGTTCCATTTGAAGTCGCTACATCAACTCTAG 359
Query 366 ACCTCTCCTCTCTGAACTATATCGAAAACCTCGATGACCAAGTTGCTTTGCGGCTTGTAC 425
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 360 ACCTCTCCTCTCTAAACTATATAGAAAACCTCGATGACCAAGTTGCATTGCGGCTTGTTC 419
Query 426 CTGAAATCGAAATCGACTACGAGAGCAACGTTTGTTATCACCCTCTAGCTTTGCAGGTTA 485
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CTGATATCGAAATCGACTACGAGAGCAACGTTTCTTATCACCCTCTAGCTTTGCAGGTTA 479
Query 486 CCAAGTTTGCCTGTGGAGGATTCACCATTGGCACCGCATTGACACACGCTGTGTGTGATG 545
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 480 CCAAGTTTGCCTGTGGAGGATTCACCATTGGCACCGCATTGACGCACGCTGTGTGTGACG 539
Query 546 GATACGGTGTGGCTCAGATCATCCATGCCTTGACCGAGTTGGCTGCAGGAAAGACTGAGC 605
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 540 GATACGGTGTGGCTCAGATCATCCATGCCTTGACCGAGTTGGCTGCCGGAAAGACCGAGC 599
Query 606 CATCGGTGAAGTCAGTGTGGCAGAGAGAGCGGCTGGTCGGAAAAATTGACAATAAACCAG 665
||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 600 CATCGGTGAAGCCAGTGTGGCAGAGAGAGCGGCTTGTCGGAAAAATTGACGATAAACCAG 659
Query 666 GCAAAGTGCCCGGTAGCCATATTGATGGTTTTTTGGCCACCTCAGCATATTTGCCAACTA 725
||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 660 GCAAAGTGCCCGGCAGCCACATTGATGGTCTTTTGGCCACCTCACCATATTTGCCAACTA 719
Query 726 CTGATGTCGTCACAGAGACAATAAACATTCGTGCTGGGGATATAAAAAGGCTTAAAGACT 785
||||||||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 720 CTGATGTCGTCACGGAGATAATAAACATTCCCGCTGGAGATATTAAAAGGCTTAAAGACT 779
Query 786 CTATGATGAAAGAATGTGAGTACCTTAAAGAGAGTTTCACTACTTATGAAGTACTTAGTT 845
|| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTTGATGAGGGAATGTGATTACCTTAAAGAGAGTTTCACTACTTATGAAGTACTTAGTT 839
Query 846 CATACATATGGAAATTAAGATCTCGAGCCCTAAAACTAAACCCTGACGGGATCACTGTCC 905
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 CTTACGTATGGAAATTAAGATCTCGAGCTCTAAAACTAAACCCTGACGGGATCACTGTCC 899
Query 906 TCGGCGTGGCTGTTGGAATCCGACATGTTTTGGACCCACCACTTCCTAAAGGATACTACG 965
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTGGCGTGGCTGTTGGAATCCGACATGTTTTGGACCCACCACTTCCTAAAGGATACTACG 959
Query 966 GTAACGCTTACATAGACGTCTACGTCGAGCTAACTGTGAGAGAACTCGAAGAATCATCAA 1025
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 960 GTAACGCGTACATAGACGTCTACGTGGAGCTAACTGTGAGAGAACTCCAAGAATCATCAA 1019
Query 1026 TCTCTAACATCGCGAATCGTGTGAAGAAAGCCAAGAAAACAGCCTATGAAAAAGGGTATA 1085
||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1020 TCTTTAACATCGCGAGTCGTGTGAAGAAAGCGAAGAAAACAGCCTATGAAAAGGGGTATA 1079
Query 1086 TCGAGGAAGAGCTAAAGAACACGGAGAGATTGATGAGAGATGATTCAATGTTCGAAGGGG 1145
||||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 1080 TCGAGGAAGAGCTAACGAACACGGAGAGATTGATGAGGGATGATGCGATGTTCGAAGGGG 1139
Query 1146 TAAGCGATGGATTATTTTTCTTGACGGATTGGAGGAATATTGGTTGGTTCGGATCAATGG 1205
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 TAAGCGATGGATTGTTTTTCTTGACGGATTGGAGGAATATTGGTTGGTTCGGATCGATGG 1199
Query 1206 ATTTCGGTTGGAATGAGCCAGTGAATTTACGACCATTGACCCAGCGGGAGAGCACAGTGC 1265
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 ATTTCGGTTGGAATGAGCCCGTGAATTTACGACCATTGACCCAACGGGAGAGCACAGTGC 1259
Query 1266 ACGTAGGGATGATCTTGAAACCTTCAAAATCGGATCCATCAATGGAAGGTGGAGTTAAAG 1325
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ACGTAGGGATGATCTTGAAACCTTCAAAATTGGATCCATCAATGGAAGGTGGAGTTAAAG 1319
Query 1326 TGATCATGAAGTTGCC-ACGAGACGCAATGGTTGAATTCAAGCGTGAGATGGCTACTATG 1384
|||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1320 TGATCATGAAGTTGCCGA-GAGACGCAATGGTTGAATTCAAGCGAGAGATGGCTGCTATG 1378
Query 1385 AAGAAACTTTATTTTGGTGATACCAACTAA 1414
|| |||||||||||||||||||||||||||
Sbjct 1379 AACAAACTTTATTTTGGTGATACCAACTAA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5